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CRISPR Plasmids: Interfere

Browse CRISPR Plasmids

By Function
Genome Editing
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CRISPR Resources

Catalytically dead dCas9, or dCas9 fused to a transcriptional repressor peptide like KRAB, can knock down gene expression by interfering with transcription. Design your gRNA to target your gene of interest’s promoter/enhancer or the beginning of the coding sequence. If the plasmid you’re using does not also express a gRNA, you will need to use a separate gRNA expression plasmid to target the dCas9-repressor to your specific locus.



Browse, sort, or search the tables below for CRISPR plasmids for transcriptional inhibition.
Plasmids are available for expression in mammalian systems, bacteria, plants, and yeast.

Mammalian

Plasmid Gene/Insert Promoter Selectable Marker PI Publication Hidden Extra Search Info
pdCas9-humanized dead Cas9 with 3X NLS (Homo sapiens) MSCV LTR promoter Puromycin Qi Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression. Cell. 2013 Feb 28;152(5):1173-83. doi: 10.1016/j.cell.2013.02.022. Expression of a catalytically inactive, human codon-optimized Cas9 under the control of Murine Stem Cell retroVirus LTR promoter for mammalian gene knockdown pMSCVpuro
pdCas9::BFP-humanized dCas9 fused to BFP (Homo sapiens) MSCV LTR promoter Puromycin Qi Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression. Cell. 2013 Feb 28;152(5):1173-83. doi: 10.1016/j.cell.2013.02.022. Expression of a catalytically inactive, human codon-optimized Cas9-BFP fusion under the control of Murine Stem Cell retroVirus LTR promoter for mammalian gene knockdown pMSCVpuro
pHR-SFFV-dCas9-BFP dCas9-BFP fusion (Homo sapiens) SFFV Weissman CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes. Cell. 2013 Jul 9. pii: S0092-8674(13)00826-X. doi: 10.1016/j.cell.2013.06.044. Human expression vector containing SFFV promoter, dCas9 that is fused to 2x NLS and tagBFP pHR
pHR-SFFV-dCas9-BFP-KRAB dCas9-BFP-KRAB fusion (Homo sapiens) SFFV Weissman CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes. Cell. 2013 Jul 9. pii: S0092-8674(13)00826-X. doi: 10.1016/j.cell.2013.06.044. Human expression vector containing SFFV promoter, dCas9 that is fused to 2x NLS, tagBFP and a KRAB domain pHR
pcDNA-dCas9 dCas9 (Other) CMV Gersbach RNA-guided gene activation by CRISPR-Cas9-based transcription factors. Nat Methods. 2013 Jul 25. doi: 10.1038/nmeth.2600. Expresses inactivated S. pyogenes dCas9 (D10A, H840A) in mammalian cells pcDNA3.1
Cas9m2 Cas9m2 (Other) Church CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat Biotechnol. 2013 Aug 1. doi: 10.1038/nbt.2675. Cas9 D10A+H840A pcDNA3.3_TOPO
Cas9m3 Cas9m3 (Other) Church CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat Biotechnol. 2013 Aug 1. doi: 10.1038/nbt.2675. Cas9 D10A+D839A+H840A pcDNA3.3_TOPO
Cas9m4 Cas9m4 (Other) Church CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat Biotechnol. 2013 Aug 1. doi: 10.1038/nbt.2675. Cas9 D10A+D839A+H840A+N863A pcDNA3.3_TOPO
pHAGE TRE dCas9 dCas9 (Other) TRE Neomycin (select with G418) Wolfe Cas9 effector-mediated regulation of transcription and differentiation in human pluripotent stem cells. Development. 2014 Jan;141(1):219-23. doi: 10.1242/dev.103341. Tet-regulatable dCas9 lentiviral expression vector pHAGE
pHAGE TRE dCas9-KRAB dCas9 (Other) TRE Neomycin (select with G418) Wolfe Cas9 effector-mediated regulation of transcription and differentiation in human pluripotent stem cells. Development. 2014 Jan;141(1):219-23. doi: 10.1242/dev.103341. Tet-regulatable dCas9-KRAB 2nd generation lentiviral expression vector pHAGE
pHAGE EF1α dCas9-KRAB dCas9 (Other) EF1alpha Puromycin Wolfe Cas9 effector-mediated regulation of transcription and differentiation in human pluripotent stem cells. Development. 2014 Jan;141(1):219-23. doi: 10.1242/dev.103341. Constitutive dCas9-KRAB 2nd generation lentiviral expression vector pHAGE
pSLQ1658-dCas9-EGFP dCas9 fuse to EGFP (Homo sapiens) MSCV LTR promoter Puromycin Qi Dynamic Imaging of Genomic Loci in Living Human Cells by an Optimized CRISPR/Cas System. Cell. 2013 Dec 19;155(7):1479-91. doi: 10.1016/j.cell.2013.12.001. Template for NLS-dCas9-NLS-EGFP fusion protein for CRISPR imaging (the recipient vector can be TetON 3G promoter system) pMSCVpuro
pLV hUbC-dCas9-T2A-GFP humanized dead Cas9 T2A GFP (Other) hUbC Zeo marker is outside the LTRs and will not be packaged into virus. Gersbach Multiplex CRISPR/Cas9-based genome engineering from a single lentiviral vector. Nucleic Acids Res. 2014 Aug 13. pii: gku749. Co-expresses human optimized S. pyogenes dCas9 and GFP FUGW
pcDNA3.1-CibN-dCas9 CibN-dCas9 (Arabidopsis thaliana) CMV Neomycin (select with G418) Gersbach A light-inducible CRISPR-Cas9 system for control of endogenous gene activation. Nat Chem Biol. 2015 Feb 9. doi: 10.1038/nchembio.1753. Expresses CibN-dCas9 in mammalian cells pcDNA3.1
pcDNA3.1-dCas9-CibN dCas9-CibN (Arabidopsis thaliana) CMV Neomycin (select with G418) Gersbach A light-inducible CRISPR-Cas9 system for control of endogenous gene activation. Nat Chem Biol. 2015 Feb 9. doi: 10.1038/nchembio.1753. Expresses dCas9-CibN in mammalian cells pcDNA3.1
pcDNA3.1-CibN-dCas9-CibN dCas9-CibN (Arabidopsis thaliana) CMV Neomycin (select with G418) Gersbach A light-inducible CRISPR-Cas9 system for control of endogenous gene activation. Nat Chem Biol. 2015 Feb 9. doi: 10.1038/nchembio.1753. Expresses CibN-dCas9-CibN in mammalian cells pcDNA3.1
pHR-SFFV-KRAB-dCas9-P2A-mCherry KRAB-dCas9-P2A-mCherry fusion (Homo sapiens) SFFV mCherry Weissman Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation. Cell. 2014 Oct 23;159(3):647-61. doi: 10.1016/j.cell.2014.09.029. Epub 2014 Oct 9. 2nd Generation Lentiviral vector. Expresses an N-terminal KRAB-dCas9 fusion protein and mCherry pHR
pcDNA-dCas9-HA S.pyogenes dCas9 with c-terminal HA tag (Synthetic) CMV Gersbach Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers. Nat Biotechnol. 2015 May;33(5):510-7. doi: 10.1038/nbt.3199. Epub 2015 Apr 6. encodes c-terminal HA-tagged S. pyogenes dCas9 driven by CMV promoter pcDNA3.1
pX330A_dCas9-1x2 humanized S. pyogenes dCas9 (Other) CBh Yamamoto Production of knockout mice by DNA microinjection of various CRISPR/Cas9 vectors into freeze-thawed fertilized oocytes. BMC Biotechnol. 2015 May 22;15(1):33. Expresses dCas9 and gRNA pUC ori vector
pX330A_dCas9-1x3 humanized S. pyogenes dCas9 (Other) CBh Yamamoto Production of knockout mice by DNA microinjection of various CRISPR/Cas9 vectors into freeze-thawed fertilized oocytes. BMC Biotechnol. 2015 May 22;15(1):33. Expresses dCas9 and gRNA pUC ori vector
pX330A_dCas9-1x5 humanized S. pyogenes dCas9 (Other) CBh Yamamoto Production of knockout mice by DNA microinjection of various CRISPR/Cas9 vectors into freeze-thawed fertilized oocytes. BMC Biotechnol. 2015 May 22;15(1):33. Expresses dCas9 and gRNA pUC ori vector
pX330A_dCas9-1x6 humanized S. pyogenes dCas9 (Other) CBh Yamamoto Production of knockout mice by DNA microinjection of various CRISPR/Cas9 vectors into freeze-thawed fertilized oocytes. BMC Biotechnol. 2015 May 22;15(1):33. Expresses dCas9 and gRNA pUC ori vector
pEF1a-CRY2PHR-SID4X SID4X-CYR2PHR (Synthetic) EF1alpha Kong Aspirin cooperates with p300 to activate the acetylation of H3K9 and promote FasL-mediated apoptosis of cancer stem-like cells in colorectal cancer Theranostics AAV expression of CRYS2PHR-SID4X pAAV
px330-CIB1-dCas9 U6 and CMV Kong Aspirin cooperates with p300 to activate the acetylation of H3K9 and promote FasL-mediated apoptosis of cancer stem-like cells in colorectal cancer Theranostics Mammalian gRNA expression vector also expressing CIB1-dCas9 px330
pCCL-PGK-SPdCas9-BFP-DNMT1 dCas9-BFP-DNMT1, catalytic domain Luo Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA methylation by dCas9 methyltransferases. Gigascience. 2018 Mar 1;7(3):1-19. doi: 10.1093/gigascience/giy011. dCas9 fused to BFP and the human DNMT1 catalytic domain 3rd Generation lentiviral vector
pCCL-PGK-SPdCas9-BFP-DNMT3A dSpCas9-BFP-DNMT3A, catalytic domain of DNMT3A (Synthetic) Luo Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA methylation by dCas9 methyltransferases. Gigascience. 2018 Mar 1;7(3):1-19. doi: 10.1093/gigascience/giy011. dCas9 fused to BFP and the human DNMT3A catalytic domain 3rd Generation lentiviral vector
pCCL-PGK-SPdCas9-BFP-DNMT3B dSpCas9-BFP-DNMT3B, catalytic domain of DNMT3B (Synthetic) Luo Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA methylation by dCas9 methyltransferases. Gigascience. 2018 Mar 1;7(3):1-19. doi: 10.1093/gigascience/giy011. dCas9 fused to BFP and the human DNMT3B catalytic domain 3rd Generation lentiviral vector
pCCL-PGK-SPdCas9-BFP-EGFP dSpCas9-BFP-EGFP (Synthetic) Luo Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA methylation by dCas9 methyltransferases. Gigascience. 2018 Mar 1;7(3):1-19. doi: 10.1093/gigascience/giy011. dCas9 fused to BFP and EGFP 3rd Generation lentiviral vector
pLV hUbC-dCas9 KRAB-T2A-GFP humanized dead Cas9 KRAB T2A GFP (Other) Gersbach Multiplex CRISPR/Cas9-based genome engineering from a single lentiviral vector. Nucleic Acids Res. 2014 Aug 13. pii: gku749. Co-expressed human optimized S. pyogenese dCas9 fused to KRAB repressor domain and GFP FUGW
pEF_dCas9 dCas9 (Other) human EF1[alpha] Rinn Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display. Nat Methods. 2015 Jul;12(7):664-70. doi: 10.1038/nmeth.3433. Epub 2015 Jun 1. Transient expression of Sp-dCas9 in mammalian cells, under an EF1-alpha promoter. pNEB193
  • Tag / Fusion Protein
    • 3xFLAG (C terminal on insert)
    		•
    pCCL-PGK-SPdCas9-BFP-DNMT3A(E752A) dSpCas9-BFP-DNMT3A(E752A), DNMT3A catalytic domain with inactivation mutation E752A (Synthetic) Luo Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA methylation by dCas9 methyltransferases. Gigascience. 2018 Mar 1;7(3):1-19. doi: 10.1093/gigascience/giy011. dCas9 fused to BFP and the human DNMT3A catalytically inactive domain 3rd Generation lentiviral vector
    pCCL-PGK-SPdCas9-BFP-DNMT3B(E697A) dSpCas9-BFP-DNMT3B(E697A), DNMT3B catalytic domain with inactivation mutation E697A (Other) Luo Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA methylation by dCas9 methyltransferases. Gigascience. 2018 Mar 1;7(3):1-19. doi: 10.1093/gigascience/giy011. dCas9 fused to BFP and the human DNMT3B catalytically inactive domain 3rd Generation lentiviral vector
    pLenti-EF1a-SPdCas9-EGFP-2A-Blast dSpCas9-EGFP (Synthetic) Luo Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA methylation by dCas9 methyltransferases. Gigascience. 2018 Mar 1;7(3):1-19. doi: 10.1093/gigascience/giy011. dCas9 fused to EGFP 3rd generation lentiviral vector
    pLenti-EF1a-SPdCas9-DNMT3A-2A-Blast dSpCas9-DNMT3A catalytic domain (Synthetic) Luo Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA methylation by dCas9 methyltransferases. Gigascience. 2018 Mar 1;7(3):1-19. doi: 10.1093/gigascience/giy011. dCas9 fused to human DNMT3A catalytic domain 3rd generation lentiviral vector
    pLenti-EF1a-SPdCas9-DNMT3B-2A-Blast dSpCas9-DNMT3B catalytic domain (Synthetic) Luo Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA methylation by dCas9 methyltransferases. Gigascience. 2018 Mar 1;7(3):1-19. doi: 10.1093/gigascience/giy011. dCas9 fused to human DNMT3B catalytic domain 3rd generation lentiviral vector
    pLenti-EF1a-SPdCas9-DNMT3A(E752A)-2A-Blast dSpCas9-DNMT3A(E752A) Luo Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA methylation by dCas9 methyltransferases. Gigascience. 2018 Mar 1;7(3):1-19. doi: 10.1093/gigascience/giy011. dCas9 fused to the human DNMT3A catalytically inactive domain 3rd generation lentiviral vector
    pLenti-EF1a-SPdCas9-DNMT3B(E697A)-2A-Blast dSpCas9-DNMT3B(E697A), DNMT3B catalytic domain with inactivation mutation E697A (Other) Luo Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA methylation by dCas9 methyltransferases. Gigascience. 2018 Mar 1;7(3):1-19. doi: 10.1093/gigascience/giy011. dCas9 fused to the human DNMT3B catalytically inactive domain 3rd Generation lentiviral vector
    pLV hU6-sgRNA hUbC-dCas9-KRAB-T2a-Puro humanized dCas9-KRAB T2A Puro (Other), sgRNA Puromycin Gersbach Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements. Nat Methods. 2015 Dec;12(12):1143-9. doi: 10.1038/nmeth.3630. Epub 2015 Oct 26. Express sgRNA and dCas9-KRAB from lentiviral vector FUGW
    pLV hU6-sgRNA hUbC-dCas9-KRAB-T2a-GFP humanized dCas9-KRAB T2A GFP (Other), sgRNA Gersbach Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements. Nat Methods. 2015 Dec;12(12):1143-9. doi: 10.1038/nmeth.3630. Epub 2015 Oct 26. Express sgRNA and dCas9-KRAB from 3rd generation lentiviral vector FUGW
    pCR1003 T7pr_10xHis-MBP-TEV-SPydCas9 (D10A, H840A) Corn Enhancing homology-directed genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA. Nat Biotechnol. 2016 Jan 20. doi: 10.1038/nbt.3481. Express Streptococcus pyogenes dCas9 (D10A, H840A) SPynCas9
    pCR1056 T7pr_6xHis-MBP-TEV-SPydCas9 (D10A,H840A)-2xNLS Corn Enhancing homology-directed genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA. Nat Biotechnol. 2016 Jan 20. doi: 10.1038/nbt.3481. Express Streptococcus pyogenes dCas9 (D10A, H840A) carrying two C-terminal SV40 NLS SPynCas9
    pAC1445-pmax-dCas9 dCas9 (Synthetic) CAGGS + chim intron Cheng Casilio: a versatile CRISPR-Cas9-Pumilio hybrid for gene regulation and genomic labeling. Cell Res. 2016 Feb;26(2):254-7. doi: 10.1038/cr.2016.3. Epub 2016 Jan 15. dCas9 expressed in pmax vector pAC90-pmax-DEST
    pAAVS1-NDi-CRISPRi (Gen1) dCas9-KRAB-P2A-mCherry (Synthetic), rtTA (Synthetic) TRE3G, CAG Neomycin (select with G418) Conklin CRISPR Interference Efficiently Induces Specific and Reversible Gene Silencing in Human iPSCs. Cell Stem Cell. 2016 Apr 7;18(4):541-53. doi: 10.1016/j.stem.2016.01.022. Epub 2016 Mar 10. Dox-inducible CRISPR interference (CRISPRi) knock in construct into the AAVS1 locus with mCherry marker pAAVS1
    pAAVS1-NDi-CRISPRi (Gen2) dCas9-KRAB (Synthetic), rtTA (Synthetic) TRE3G, CAG Neomycin (select with G418) Conklin CRISPR Interference Efficiently Induces Specific and Reversible Gene Silencing in Human iPSCs. Cell Stem Cell. 2016 Apr 7;18(4):541-53. doi: 10.1016/j.stem.2016.01.022. Epub 2016 Mar 10. Dox-inducible CRISPR interference (CRISPRi) knock in construct into the AAVS1 locus pAAVS1
    pAAVS1-NC-CRISPRi (Gen3) dCas9-KRAB (Synthetic) CAG Neomycin (select with G418) Conklin CRISPR Interference Efficiently Induces Specific and Reversible Gene Silencing in Human iPSCs. Cell Stem Cell. 2016 Apr 7;18(4):541-53. doi: 10.1016/j.stem.2016.01.022. Epub 2016 Mar 10. Constitutive CRISPR interference (CRISPRi) knock in construct into the AAVS1 locus pAAVS1
    pHAGE-TO-dCas9 Sp dCas9 (Synthetic) CMV-TO Pederson Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow. Nat Biotechnol. 2016 Apr 18. doi: 10.1038/nbt.3526. dCas9 pHAGE-DEST
    WN10150 dead (908A) AsCpf1 Neomycin (select with G418) Welker Mb- and FnCpf1 nucleases are active in mammalian cells: activities and PAM preferences of four wild-type Cpf1 nucleases and of their altered PAM specificity variants. Nucleic Acids Res. 2018 Sep 20. pii: 5103950. doi: 10.1093/nar/gky815. Expresses dead (908A) AsCpf1 pcDNA3.1
    CSII-U6-gRNA-CBh-3xFLAG-PA-dCas9-P2A-Puro sgRNA and dCas9 from pX330 (Other) U6 for sgRNA and CBh for dCas9 Puromycin Kimura Dr. Sekita CRISPR/Cas9 (unpublished) Lentivirus vector to express guideRNA and dCas9 with puro resistant gene CSII
    pLV-dCas9-KRAB-PGK-HygR humanized dead Cas9 KRAB (Other), aminoglycoside phosphotransferase from E. coli (Other) Human Ubiquitin C Promoter, mouse phosphoglycerate kinase 1 promoter Hygromycin Gersbach CRISPR-Cas9 epigenome editing enables high-throughput screening for functional regulatory elements in the human genome. Nat Biotechnol. 2017 Apr 3. doi: 10.1038/nbt.3853. Lentiviral Sp dCas9-KRAB fusion with Hygromycin B resistance cassette. FUGW
    pSLQ2818 pPB: CAG-PYL1-KRAB-IRES-Puro-WPRE-SV40PA PGK-ABI-tagBFP-SpdCas9 ABI-tagBFP-Sp dCas9 (Arabidopsis thaliana), PYL1-KRAB (Arabidopsis thaliana) PGK, CAG Puromycin Qi Complex transcriptional modulation with orthogonal and inducible dCas9 regulators. Nat Methods. 2016 Oct 24. doi: 10.1038/nmeth.4042. Expresses ABA-inducible KRAB-Sp dCas9 PB
    pSLQ2813 pPB: CAG-GID1-KRAB-IRES-Puro-WPRE PGK-ABI-tagBFP-SpdCas9 GAI-tagBFP-Sp dCas9 (Arabidopsis thaliana), GID1-KRAB (Arabidopsis thaliana) PGK, CAG Puromycin Qi Complex transcriptional modulation with orthogonal and inducible dCas9 regulators. Nat Methods. 2016 Oct 24. doi: 10.1038/nmeth.4042. Expresses GA-inducible KRAB-Sp dCas9 PB
    pSLQ2815 pPB: CAG-Puro-WPRE PGK-KRAB-tagBFP-SpdCas9 KRAB-tagBFP-Sp dCas9 (Synthetic), Puro PGK, CAG Puromycin Qi Complex transcriptional modulation with orthogonal and inducible dCas9 regulators. Nat Methods. 2016 Oct 24. doi: 10.1038/nmeth.4042. Expresses direct fusion KRAB-Sp dCas9 PB
    pGH125_dCas9-Blast dCas9 and Blasticidin resistance Blasticidin Bassik Directed evolution using dCas9-targeted somatic hypermutation in mammalian cells. Nat Methods. 2016 Oct 31. doi: 10.1038/nmeth.4038. lentiviral expression vector for dCas9 with Blasticidin selectable marker Addgene #61425
    TRE-KRAB-dCas9-IRES-BFP KRAB-dCas9-IRES-BFP (Synthetic) TRE3G BFP Lander Systematic mapping of functional enhancer-promoter connections with CRISPR interference. Science. 2016 Sep 29. pii: aag2445. Lentiviral vector expressing a KRAB-dCas9 fusion protein and BFP pHR
    TRE-KRAB-dCas9-IRES-GFP KRAB-dCas9-IRES-GFP (Synthetic) TRE3G GFP Lander Systematic mapping of functional enhancer-promoter connections with CRISPR interference. Science. 2016 Sep 29. pii: aag2445. 2nd generation lentiviral vector expressing a KRAB-dCas9 fusion protein and GFP pHR
    pMH0001 dCas9 (Other) SFFV BFP fluorescence Weissman A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response. Cell. 2016 Dec 15;167(7):1867-1882.e21. doi: 10.1016/j.cell.2016.11.048. UCOE-SFFV-dCas9-BFP-KRAB pHR-SFFV-dCas9-BFP-KRAB
    pTE4565 hMbCpf1(D986A) CMV Neomycin (select with G418) Welker Mb- and FnCpf1 nucleases are active in mammalian cells: activities and PAM preferences of four wild-type Cpf1 nucleases and of their altered PAM specificity variants. Nucleic Acids Res. 2018 Sep 20. pii: 5103950. doi: 10.1093/nar/gky815. Expresses inactive/dead, humanized MbCpf1 nuclease pcDNA3.1
    pTE4889 Fn crRNA, hFnCpf1(D917A) human U6, CMV Neomycin (select with G418) Welker Mb- and FnCpf1 nucleases are active in mammalian cells: activities and PAM preferences of four wild-type Cpf1 nucleases and of their altered PAM specificity variants. Nucleic Acids Res. 2018 Sep 20. pii: 5103950. doi: 10.1093/nar/gky815. Expresses FnCpf1 crRNA and inactive/dead, humanized FnCpf1 nuclease pcDNA3.1
    Lenti-dCas9-KRAB-blast dCas9 (Synthetic) Blasticidin Hon Multiplexed Engineering and Analysis of Combinatorial Enhancer Activity in Single Cells. Mol Cell. 2017 Apr 20;66(2):285-299.e5. doi: 10.1016/j.molcel.2017.03.007. Epub 2017 Apr 13. Plasmid expression dCas9 protein in fusion with KRAB domain plenti
    pLKO5d.SFFV.dCas9-KRAB.P2A.BSD dCas9 (Other), na, SFFV (Homo sapiens), P2A-BSD (Synthetic) Blasticidin Heckl The non-coding RNA landscape of human hematopoiesis and leukemia. Nat Commun. 2017 Aug 9;8(1):218. doi: 10.1038/s41467-017-00212-4. CRISPR interference pLKO5d
    pX330-HA-dSpCas9 dead/inactive SpCas9 (Other) Cbh Welker Crossing enhanced and high fidelity SpCas9 nucleases to optimize specificity and cleavage. Genome Biol. 2017 Oct 6;18(1):190. doi: 10.1186/s13059-017-1318-8. Expression plasmid for human codon-optimized dead/inactive SpCas9 (without U6-sgRNA coding sequence) pX330-like (without U6-sgRNA coding sequence)
    pX330-Flag-dSpCas9 dead/inactive SpCas9 with FLAG tag (Other) Cbh Welker Crossing enhanced and high fidelity SpCas9 nucleases to optimize specificity and cleavage. Genome Biol. 2017 Oct 6;18(1):190. doi: 10.1186/s13059-017-1318-8. Expression plasmid for human codon-optimized dead/inactive SpCas9 (without U6-sgRNA coding sequence) pX330-like (without U6-sgRNA coding sequence)
    pX330-Flag-deSpCas9 dead/inactive eSpCas9 with FLAG tag (Other) Cbh Welker Crossing enhanced and high fidelity SpCas9 nucleases to optimize specificity and cleavage. Genome Biol. 2017 Oct 6;18(1):190. doi: 10.1186/s13059-017-1318-8. Expression plasmid for human codon-optimized dead/inactive increased fidelity eSpCas9 (1.1) (without U6-sgRNA coding sequence) pX330-like (without U6-sgRNA coding sequence)
    pX330-Flag-dSpCas9-HF1 dead/inactive SpCas9-HF1 with FLAG tag (Other) Cbh Welker Crossing enhanced and high fidelity SpCas9 nucleases to optimize specificity and cleavage. Genome Biol. 2017 Oct 6;18(1):190. doi: 10.1186/s13059-017-1318-8. Expression plasmid for human codon-optimized dead/inactive high-fidelity SpCas9-HF1 (without U6-sgRNA coding sequence) pX330-like (without U6-sgRNA coding sequence)
    pX330-Flag-dHeFSpCas9 dead/inactive HeFSpCas9 with FLAG tag (Other) Cbh Welker Crossing enhanced and high fidelity SpCas9 nucleases to optimize specificity and cleavage. Genome Biol. 2017 Oct 6;18(1):190. doi: 10.1186/s13059-017-1318-8. Expression plasmid for human codon-optimized dead/inactive increased fidelity HeFSpCas9 (without U6-sgRNA coding sequence) pX330-like (without U6-sgRNA coding sequence)
    pLX_311-KRAB-dCas9 dCas9 (Other) EF1a Blasticidin Hahn Complementary information derived from CRISPR Cas9 mediated gene deletion and suppression. Nat Commun. 2017 May 23;8:15403. doi: 10.1038/ncomms15403. for CRISPRi, lentiviral expression of KRAB-dCas9 and BlastR. Also called pXPR_121 pXPR
  • Tag / Fusion Protein
    • KRAB (N terminal on insert)
    		•
    pXPR_123 dCas9 (Other) EF1a Blasticidin Root Orthologous CRISPR-Cas9 enzymes for combinatorial genetic screens. Nat Biotechnol. 2018 Feb;36(2):179-189. doi: 10.1038/nbt.4048. Epub 2017 Dec 18. for CRISPRi, lentiviral expression of dCas9-p300 2A BlastR. pXPR
  • Tag / Fusion Protein
    • p300 (C terminal on insert)
    		•
    lenti-EF1a-dCas9-KRAB-Puro dCas9-KRAB-T2A-Puro (Other) EF-1a Puromycin, Zeocin Brennand Evaluating Synthetic Activation and Repression of Neuropsychiatric-Related Genes in hiPSC-Derived NPCs, Neurons, and Astrocytes. Stem Cell Reports. 2017 Aug 8;9(2):615-628. doi: 10.1016/j.stemcr.2017.06.012. Epub 2017 Jul 27. 3rd generation lenti vector encoding dCas9-KRAB with 2A puromycin resistance marker (EF1a-dCas9-KRAB-T2A-Puro-WPRE) pLenti
    pHR-EF1a-dCas9-HA-BFP-KRAB-NLS dCas9-HA-BFP-KRAB-NLS (Homo sapiens) EF1a TagBFP Corn Corn Lab Cas9 plasmids (unpublished) Lentiviral expression of dCas9-HA-BFP-KRAB-NLS for CRISPRi driven by a hEF1alpha promoter pHR
  • Tag / Fusion Protein
    • HA-TagBFP-KRAB-NLS (C terminal on insert)
    		•
    pCXLE-dCas9GFP-shP53 dCas9GFP-shP53 (Other) CAG Otonkoski Human pluripotent reprogramming with CRISPR activators. Nat Commun. 2018 Jul 6;9(1):2643. doi: 10.1038/s41467-018-05067-x. EBNA episome plasmid for CAG promoter constitutive expression of dCas9-GFP. Includes p53 shRNA expression cassette. pCXLE
    PB-tight-DDdCas9GFP-IRES-Neo DDdCas9GFP-IRES-Neo (Other) TRE-tight Neomycin (select with G418) Otonkoski Human pluripotent reprogramming with CRISPR activators. Nat Commun. 2018 Jul 6;9(1):2643. doi: 10.1038/s41467-018-05067-x. PiggyBac construct with doxycyline inducible TRE-tight promoter expression of dCas9-GFP followed by IRES-Neomycin selection cassette. PB-tight
    pAW91.dCas9 dCas9 Blasticidin Young YY1 Is a Structural Regulator of Enhancer-Promoter Loops. Cell. 2017 Dec 14;171(7):1573-1588.e28. doi: 10.1016/j.cell.2017.11.008. Epub 2017 Dec 7. Expresses dCas9 dcas9-vp64
    MMW1578: CAG-human dLbCpf1(D832A)-NLS-3xHA dLbCpf1 (D832A) (Other) CAG Joung Inducible and multiplex gene regulation using CRISPR-Cpf1-based transcription factors. Nat Methods. 2017 Oct 30. doi: 10.1038/nmeth.4483. Mammalian expression vector for catalytically inactive Cpf1 from Lachnospiraceae bacterium (dLbCpf1) pCAG-GFP
    AAV CMV-dSaCas9-KRAB-bGHpA dead S. aureus Cas9 KRAB (Other) CMV Gersbach RNA-guided transcriptional silencing in vivo with S. aureus CRISPR-Cas9 repressors. Nat Commun. 2018 Apr 26;9(1):1674. doi: 10.1038/s41467-018-04048-4. AAV expressing deactivated S. aureus Cas9 fused to a KRAB repressor pAAV
    pLV hUbC-dSaCas9-KRAB-T2A-PuroR dead S. aureus Cas9 KRAB T2A PuroR (Other) hUbC Puromycin Gersbach RNA-guided transcriptional silencing in vivo with S. aureus CRISPR-Cas9 repressors. Nat Commun. 2018 Apr 26;9(1):1674. doi: 10.1038/s41467-018-04048-4. Lentiviral vector with puro selection for expression of S. aureus dCas9-KRAB FUGW
    SID4x-dCas9-KRAB SID4x (Homo sapiens), KRAB (Homo sapiens) Neomycin (select with G418) Gertz Multiplex Enhancer Interference Reveals Collaborative Control of Gene Regulation by Estrogen Receptor alpha-Bound Enhancers. Cell Syst. 2017 Oct 25;5(4):333-344.e5. doi: 10.1016/j.cels.2017.08.011. Epub 2017 Sep 27. Expresses catalytically inactive dCas9 with N-terminal fusion of Sin3a Interacting Domain (SID) and C-terminal fusion of repressive KRAB domain pAC95-pmax (Addgene: 48227)
    AAV-nEF-dCas9 nEF-dCas9 nEF Belmonte In Vivo Target Gene Activation via CRISPR/Cas9-Mediated Trans-epigenetic Modulation. Cell. 2017 Dec 14;171(7):1495-1507.e15. doi: 10.1016/j.cell.2017.10.025. Epub 2017 Dec 7. Expresses SpdCas9 from the nEF promoter in AAV backbone AAV
    pdCas9-NED CMV Kiss Establishment of Cell Lines Stably Expressing dCas9-Fusions to Address Kinetics of Epigenetic Editing. Methods Mol Biol. 2018;1767:395-415. doi: 10.1007/978-1-4939-7774-1_22. Mammalian vector for expressing effector domains fused to dCas9. pMLM3705 (Addgene plasmid #47754).
  • Tag / Fusion Protein
    • dCas9, SV40 NLS, 3xFLAG (N terminal on backbone)
    		•
    pHAGE EF1α dCas9-NED EF-1α Puromycin Kiss Establishment of Cell Lines Stably Expressing dCas9-Fusions to Address Kinetics of Epigenetic Editing. Methods Mol Biol. 2018;1767:395-415. doi: 10.1007/978-1-4939-7774-1_22. Lentiviral vector for expressing effector domains fused to dCas9. pHAGE EF1α dCas9-VP64 (Addgene plasmid #50918)
  • Tag / Fusion Protein
    • 3xHA (N terminal on backbone)
    		•
    dCas9-KRAB dCas9-KRAB (Synthetic) CMV Church An enhanced CRISPR repressor for targeted mammalian gene regulation. Nat Methods. 2018 Jul 16. pii: 10.1038/s41592-018-0048-5. doi: 10.1038/s41592-018-0048-5. Conventional dCas9 repressor-dCas9-KRAB pcDNA3.3_TOPO
    dCas9-KRAB-MeCP2 dCas9-KRAB-MeCP2 (Synthetic) CMV Church An enhanced CRISPR repressor for targeted mammalian gene regulation. Nat Methods. 2018 Jul 16. pii: 10.1038/s41592-018-0048-5. doi: 10.1038/s41592-018-0048-5. Improved dCas9 repressor-dCas9-KRAB-MeCP2 pcDNA3.3_TOPO
    pB-CAGGS-dCas9-KRAB dCas9-KRAB (Synthetic) CAGGS Blasticidin Church An enhanced CRISPR repressor for targeted mammalian gene regulation. Nat Methods. 2018 Jul 16. pii: 10.1038/s41592-018-0048-5. doi: 10.1038/s41592-018-0048-5. PiggyBac compatible plasmid expressing dCas9-KRAB pB-CAGGS
    pB-CAGGS-dCas9 dCas9 (Synthetic) CAGGS Blasticidin Church An enhanced CRISPR repressor for targeted mammalian gene regulation. Nat Methods. 2018 Jul 16. pii: 10.1038/s41592-018-0048-5. doi: 10.1038/s41592-018-0048-5. PiggyBac compatible plasmid expressing dCas9 pB-CAGGS
    pB-CAGGS-dCas9-KRAB-MeCP2 dCas9-KRAB-MeCP2 (Synthetic) CAGGS Blasticidin Church An enhanced CRISPR repressor for targeted mammalian gene regulation. Nat Methods. 2018 Jul 16. pii: 10.1038/s41592-018-0048-5. doi: 10.1038/s41592-018-0048-5. PiggyBac compatible plasmid expressing dCas9-KRAB-MeCP2 pB-CAGGS
    pCR1063 dCas9-KRAB (Homo sapiens) Corn CRISPR-Cas9 genome editing in human cells occurs via the Fanconi anemia pathway. Nat Genet. 2018 Aug;50(8):1132-1139. doi: 10.1038/s41588-018-0174-0. Epub 2018 Jul 27. Expresses dCas9-KRAB tagged with mCherry: pHR-hEF1a-dCas9-mcherry-KRAB-mPGK-Hyg pLentiXI
  • Tag / Fusion Protein
    • mCherry (C terminal on insert)
    		•
    pLL7 lenti-dcas9-3xflag-blast dCas9(D10A, N863A)-T2A-Blast (Synthetic) EF1a Blasticidin Meng Intrinsic Nucleotide Preference of Diversifying Base Editors Guides Antibody Ex Vivo Affinity Maturation. Cell Rep. 2018 Oct 23;25(4):884-892.e3. doi: 10.1016/j.celrep.2018.09.090. lenti vector encoding dcas9-3xflag with T2A Blastcidin resistance marker (EF1a-NLS-dCas9-3Xflag-T2A-Blast-WPRE) lenti dCAS-VP64_Blast
    KRAB-dCas9 KRAB (Homo sapiens) CMV Neomycin (select with G418) Segal dCas9-based epigenome editing suggests acquisition of histone methylation is not sufficient for target gene repression. Nucleic Acids Res. 2017 Sep 29;45(17):9901-9916. doi: 10.1093/nar/gkx578. KRAB fused to N-terminus of dCas9; pCDNA3 vector backbone, mammalian expression pcDNA3.3-TOPO ZNF10 KOX1
    lentiCRISPR v2-dCas9 dCas9 (Synthetic), Porumycin resistance (Other) EFS-NS, EFS-NS Puromycin Gilmore lentiviral expression plasmid for gRNA, puromycin, and dCas9 (unpublished) Lentiviral plasmid for expression of gRNA and dCas9 in mammalian cells; derivative of lentiCRISPR v2 Custom
    pXPR_118 dCas9 (Other) Hygromycin Doench Doench CRISPR plasmids (unpublished) Lentiviral vector expressing dCas9 pXPR_118
    pJEP302-pAAV-CMV-dSaCas9-KRAB-pA de-catalyzed SaCas9 (Synthetic) Ploski The Development of an AAV-Based CRISPR SaCas9 Genome Editing System That Can Be Delivered to Neurons in vivo and Regulated via Doxycycline and Cre-Recombinase. Front. Mol. Neurosci. (2018) 13 A CMV driven de-catalyzed SaCas9 fused to KRAB domain for inhibition of transcription in targeted region. AAV
    pJEP305-pAAV-EFS-dSaCas9-KRAB-pA de-catalyzed SaCas9 (Synthetic) Ploski The Development of an AAV-Based CRISPR SaCas9 Genome Editing System That Can Be Delivered to Neurons in vivo and Regulated via Doxycycline and Cre-Recombinase. Front. Mol. Neurosci. (2018) 13 A EFS driven de-catalyzed SaCas9 fused to KRAB domain for inhibition of transcription in targeted region. AAV
    pJEP309-pAAV-EFS-dSaCas9-KRAB-Dio-pA de-catalyzed SaCas9 (Synthetic) Ploski The Development of an AAV-Based CRISPR SaCas9 Genome Editing System That Can Be Delivered to Neurons in vivo and Regulated via Doxycycline and Cre-Recombinase. Front. Mol. Neurosci. (2018) 13 An EFS driven inverted de-catalyzed SaCas9 fused to the transcription repressor KRAB. dSaCas9-KRAB is floxed to render the system cre-dependent. AAV
    Lenti-(BB)-EF1a-KRAB-dCas9-P2A-BlastR KRAB-dCas9-P2A-BlastR (Homo sapiens) EF1a core and U6 Blasticidin Ferrer Ferrer Lab Plasmids (unpublished) Catalytically inactive Cas9 from S. pyogenes with P2A-BlastR under the EF1a core promoter, and cloning backbone for sgRNA. Contains BsmBI sites for insertion of spacer sequences. lentiCRISPRv2
  • Tag / Fusion Protein
    • HA (C terminal on insert)
    		•
    Lenti-(BB)-hPGK-KRAB-dCas9-P2A-BlastR KRAB-dCas9-P2A-BlastR (Homo sapiens) hPGK and U6 Blasticidin Ferrer Human pancreatic islet three-dimensional chromatin architecture provides insights into the genetics of type 2 diabetes. Nat Genet. 2019 Jun 28. pii: 10.1038/s41588-019-0457-0. doi: 10.1038/s41588-019-0457-0. Catalytically inactive Cas9 from S. pyogenes with P2A-BlastR under the hPGK promoter, and cloning backbone for sgRNA. Contains BsmBI sites for insertion of spacer sequences. lentiCRISPRv2
  • Tag / Fusion Protein
    • HA (C terminal on insert)
    		•
    Lenti-(BB)-EF1a-KRAB-dCas9-P2A-EGFP KRAB-dCas9-P2A-EGFP (Homo sapiens) EF1a core and U6 Ferrer Ferrer Lab Plasmids (unpublished) Catalytically inactive Cas9 from S. pyogenes with P2A-EGFP under the EF1a core promoter, and cloning backbone for sgRNA. Contains BsmBI sites for insertion of spacer sequences. lentiCRISPRv2
  • Tag / Fusion Protein
    • HA (C terminal on insert)
    		•
    pLenti_dNmeCas9 dNmeCas9 (Other) Puromycin Sontheimer NmeCas9 is an intrinsically high-fidelity genome editing platform (unpublished) dNmeCas9 with no sgRNA cassette lenti construct pLenti
    pHR-PGK-ABI-dCas9-P2A-mcherry dCas9 (Other) PGK mcherry fluorescence Qi CRISPR-Mediated Programmable 3D Genome Positioning and Nuclear Organization. Cell. 2018 Nov 15;175(5):1405-1417.e14. doi: 10.1016/j.cell.2018.09.013. Epub 2018 Oct 11. expression of AB1-fused-dcas9 plasmids pHR
    pHAGE-TO-dCas9-P2A-HSA dCas9-P2A-HSA (Synthetic) CMV-TO Pederson CRISPR-Sirius: RNA scaffolds for signal amplification in genome imaging. Nat Methods. 2018 Nov;15(11):928-931. doi: 10.1038/s41592-018-0174-0. Epub 2018 Oct 30. CRISPR-Sirius plasmid pHAGE-TO
    lenti_dCas9-KRAB-MeCP2 dCas9-KRAB-MeCP2 (Synthetic) Blasticidin Califano Validation of VIPER-inferred master regulators by pooled CRISPR screening (unpublished) Bipartite dCas9 repressor (dCas9-KRAB-MeCP2) in a UCOE-SFFV-dCas9 lentiviral vector. pMH0001
    PB-TRE-dCas9-KRAB-MeCP2 dCas9-KRAB-MeCP2 (Synthetic) Hygromycin Califano Validation of VIPER-inferred master regulators by pooled CRISPR screening (unpublished) SP-dCas9-KRAB-MeCP2 with doxycycline-inducible expression PB-TRE
    MTK3b_030 NLS::dCAS9::NLS El-Samad A Toolkit for Rapid Modular Construction of Biological Circuits in Mammalian Cells. ACS Synth Biol. 2019 Nov 15;8(11):2593-2606. doi: 10.1021/acssynbio.9b00322. Epub 2019 Nov 5. Encodes NLS::dCAS9::NLS as a Type 3b part to be used in the MTK system MTK0_027
    PB_tre_dCas9_KRAB dCas9 fusion with KRAB, Hygromycin resistance TRE, EF1 alpha Hygromycin Calabrese A piggyBac-based toolkit for inducible genome editing in mammalian cells. RNA. 2019 May 17. pii: rna.068932.118. doi: 10.1261/rna.068932.118. PiggyBac cargo vector expressing doxycycline inducible dCas9-KRAB fusion piggyBac cargo vector
    pMTL3 AAVS1-CAG-KRAB-dCas9-BFP-KRAB (Synthetic) CAG Puromycin Kampmann CRISPR Interference-Based Platform for Multimodal Genetic Screens in Human iPSC-Derived Neurons. Neuron. 2019 Aug 5. pii: S0896-6273(19)30640-3. doi: 10.1016/j.neuron.2019.07.014. constitutive expression of KRAB-dCas9-BFP-KRAB from the AAVS1 locus pAAVS1
    pMTL5 AAVS1-CAG-DHFR-KRAB-dCas9-BFP-KRAB (Synthetic) CAG Puromycin Kampmann CRISPR Interference-Based Platform for Multimodal Genetic Screens in Human iPSC-Derived Neurons. Neuron. 2019 Aug 5. pii: S0896-6273(19)30640-3. doi: 10.1016/j.neuron.2019.07.014. DHFR-degron controlled expression of KRAB-dCas9-BFP-KRAB from the AAVS1 locus pAAVS1
    pC13N-dCas9-BFP-KRAB CLYBL-CAG-dCas9-NLS-BFP-KRAB (Synthetic) CAG Neomycin (select with G418) ; BFP Kampmann CRISPR Interference-Based Platform for Multimodal Genetic Screens in Human iPSC-Derived Neurons. Neuron. 2019 Aug 5. pii: S0896-6273(19)30640-3. doi: 10.1016/j.neuron.2019.07.014. constitutive expression of dCas9-BFP-KRAB from the CLYBL locus (Ward lab) pC13N-iRMCE
    pRT029 CLYBL-CAG-DHFR-dCas9-BFP-KRAB-DHFR (Synthetic) CAG BFP Kampmann CRISPR Interference-Based Platform for Multimodal Genetic Screens in Human iPSC-Derived Neurons. Neuron. 2019 Aug 5. pii: S0896-6273(19)30640-3. doi: 10.1016/j.neuron.2019.07.014. double-DHFR-degron controlled expression of dCas9-BFP-KRAB from the CLYBL locus pC13N
    pAT1089_PB-EF1a-Blast_2A_rtTA3-SV40pA_pCW-dCas9 HA-dCas9 (Other) TET, TET_ON (Dox inducible) Blasticidin Cheng Enhanced CRISPR-based DNA demethylation by Casilio-ME-mediated RNA-guided coupling of methylcytosine oxidation and DNA repair pathways. Nat Commun. 2019 Sep 20;10(1):4296. doi: 10.1038/s41467-019-12339-7. PiggyBac vector for establishement of doxycycline-inducible Sp dCas9 expression cell lines pAT1502
    pMH0006 dCas9-BFP-KRAB (Other) EF1A tagBFP Weissman Compromised function of the ESCRT pathway promotes endolysosomal escape of tau seeds and propagation of tau aggregation. J Biol Chem. 2019 Oct 2. pii: RA119.009432. doi: 10.1074/jbc.RA119.009432. Human expression vector containing Ubiquitous Chromatin Opening Element (UCOE) upstream of EF1alpha promoter, dCas9 that is fused to NLS, tagBFP and a KRAB domain. pHR-SFFV-dCas9-BFP-KRAB
    CAPTURE1-1_pLVX-EF1a-BirA-P2A-FB-dCas9-IRES-zsGreen1 BirA (Other), dCas9 (Other) EF1a, EF1a zsGreen1 Xu Multiplexed capture of spatial configuration and temporal dynamics of locus-specific 3D chromatin by biotinylated dCas9. Genome Biol. 2020 Mar 5;21(1):59. doi: 10.1186/s13059-020-01973-w. CAPTURE1.1 vector containing BirA-V5-His, P2A, FB-dCas9, IRES and zsGreen1 pLVX-EF1a-zsGreen1
    CAPTURE2_pLVX-EF1a-dCas9-CBio-IRES-zsGreen1 dCas9 (Other) EF1a zsGreen1 Xu Multiplexed capture of spatial configuration and temporal dynamics of locus-specific 3D chromatin by biotinylated dCas9. Genome Biol. 2020 Mar 5;21(1):59. doi: 10.1186/s13059-020-01973-w. CAPTURE2.0 vector containing dCas9-CBio, IRES and zsGreen1 pLVX-EF1a-zsGreen1
    CAPTURE2_pLVX-EF1a-NBio-dCas9-IRES-zsGreen1 dCas9 (Other) EF1a zsGreen1 Xu Multiplexed capture of spatial configuration and temporal dynamics of locus-specific 3D chromatin by biotinylated dCas9. Genome Biol. 2020 Mar 5;21(1):59. doi: 10.1186/s13059-020-01973-w. CAPTURE2.0 vector containing NBio-dCas9, IRES and zsGreen1 pLVX-EF1a-zsGreen1
    pCC_09 - hU6-BsmBI-sgRNA(E+F)-barcode-EFS-KRAB-dCas9-NLS-2A-Puro-WPRE KRAB-dSpCas9 (Other) Puromycin Sanjana High-Throughput Screens of PAM-Flexible Cas9 Variants for Gene Knockout and Transcriptional Modulation. Cell Rep. 2020 Mar 3;30(9):2859-2868.e5. doi: 10.1016/j.celrep.2020.02.010. Expresses human codon-optimized inactive SpCas9 fused to a transcriptional repressor KRAB in mammalian cells. For cloning of sgRNAs using BsmBI. Contains a barcode downstream of sgRNA cassette. lentiCRISPRv2
    pCC_10 - hU6-BsmBI-sgRNA(E+F)-barcode-EFS-KRAB-dCas9NG-NLS-2A-Puro-WPRE KRAB-dSpCas9-NG (Other) Puromycin Sanjana High-Throughput Screens of PAM-Flexible Cas9 Variants for Gene Knockout and Transcriptional Modulation. Cell Rep. 2020 Mar 3;30(9):2859-2868.e5. doi: 10.1016/j.celrep.2020.02.010. Expresses human codon-optimized inactive SpCas9-NG fused to a transcriptional repressor KRAB in mammalian cells. For cloning of sgRNAs using BsmBI. Contains a barcode downstream of sgRNA cassette. lentiCRISPRv2
    pCC_11 - hU6-BsmBI-sgRNA(E+F)-barcode-EFS-KRAB-dxCas9-NLS-2A-Puro-WPRE KRAB-dxCas9 3.7 (Other) Puromycin Sanjana High-Throughput Screens of PAM-Flexible Cas9 Variants for Gene Knockout and Transcriptional Modulation. Cell Rep. 2020 Mar 3;30(9):2859-2868.e5. doi: 10.1016/j.celrep.2020.02.010. Expresses human codon-optimized inactive xCas9 3.7 fused to a transcriptional repressor KRAB in mammalian cells. For cloning of sgRNAs using BsmBI. Contains a barcode downstream of sgRNA cassette. lentiCRISPRv2
    pCC_12 - hU6-BsmBI-sgRNA(E+F)-barcode-EFS-KRAB-dxCas9NG-NLS-2A-Puro-WPRE KRAB-dxCas9-NG (Other) Puromycin Sanjana High-Throughput Screens of PAM-Flexible Cas9 Variants for Gene Knockout and Transcriptional Modulation. Cell Rep. 2020 Mar 3;30(9):2859-2868.e5. doi: 10.1016/j.celrep.2020.02.010. Expresses human codon-optimized inactive xCas9-NG fused to a transcriptional repressor KRAB in mammalian cells. For cloning of sgRNAs using BsmBI. Contains a barcode downstream of sgRNA cassette. lentiCRISPRv2
    XClone-Cas9-Cronus-T2A-BFP Cas9 (Other) Blasticidin Johnson Tunable and temporal expression control of Cas9 (unpublished) Tunable and temporal expression control of Cas9 XLone-GFP

    Bacteria

    Plasmid Gene/Insert Promoter PI Publication Hidden Extra Search Info
    pMJ841 Cas9 (Other) T7 Doudna A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity. Science. 2012 Jun 28. pEC-K-MBP
  • Tags / Fusion Proteins
    • MBP (N terminal on backbone)
    • His6 (N terminal on backbone)
    		•
    pdCas9-bacteria dCas9 (bacteria) (Other) pLtetO-1 Qi Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression. Cell. 2013 Feb 28;152(5):1173-83. doi: 10.1016/j.cell.2013.02.022. aTc-inducible expression of a catalytically inactive bacterial Cas9 (S. pyogenes) for bacterial gene knockdown p15A vector
    pdCas9 tracrRNA (Other), dcas9 (Other), CRISPR array Marraffini Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system. Nucleic Acids Res. 2013 Jun 12. Expresses the tracrRNA, the dCas9 catalytic site mutant and a CRISPR array designed for the easy cloning of new spacers. pACYC184
    10xHis-MBP-TEV-S. pyogenes dCas9 M1C D10A C80S H840A C574S dCas9 M1C D10A C80S H840A C574S (Other) Doudna Programmable RNA recognition and cleavage by CRISPR/Cas9. Nature. 2014 Sep 28. doi: 10.1038/nature13769. dCas9 with single cysteine residue (M1C) for site-specific labelling pHMGWA
    pAN-PTet-dCas9 dCas9 (Other) Ptet Voigt Multi-input CRISPR/Cas genetic circuits that interface host regulatory networks. Mol Syst Biol. 2014 Nov 24;10:763. doi: 10.15252/msb.20145735. controls the expression of S. pyogenes dCas9 from a Tc‐inducible PTet promoter. unknown
    pCRISPathBrick Constitutive native promoters Koffas CRISPathBrick: Modular Combinatorial Assembly of Type II-A CRISPR Arrays for dCas9-Mediated Multiplex Transcriptional Repression in E. coli. ACS Synth Biol. 2015 Mar 30. E. coli vector for expression of S. pyogenes dCas9, tracrRNA, and nontargeting CRISPR array with BsaI site for inserting user-defined spacer-repeat bricks pdCas9-Marraffini (pACYC184)
    MSP712 mammalian codon-optimized Streptococcus pyogenes dCas9 (D10A/H840A)-NLS-3XFlag, and SpCas9 gRNA (Other) T7 (x2) Joung Engineered CRISPR-Cas9 nucleases with altered PAM specificities. Nature. 2015 Jun 22. doi: 10.1038/nature14592. Bacterial expression plasmid for Sp-dCas9 & sgRNA (need to clone in spacer into BsaI sites): T7-humanSpdCas9(D10A/H840A)-T7-BsaIcassette-Sp-sgRNA pACYCDuet-1
  • Tags / Fusion Proteins
    • NLS (C terminal on insert)
    • 3x FLAG (C terminal on insert)
    		•
    pMM704 dCas9, LacI, sgRNA Lu Programming a Human Commensal Bacterium, Bacteroides thetaiotaomicron, to Sense and Respond to Stimuli in the Murine Gut Microbiota. Cell Syst. 2015 Jul 29;1(1):62-71. doi: 10.1016/j.cels.2015.06.001. IPTG-inducible CRISPRi vector targeting BT1854, pNBU2 backbone, AmpR pExchange-tdk
    pMD19T-psba1-Ppsba2-dCas9-SpR dCas9 from S. pyogenes (Other) PpsbA2 Hudson Multiple Gene Repression in Cyanobacteria Using CRISPRi. ACS Synth Biol. 2015 Dec 28. Contains dCas9 from S. pyogenes under constitutive promoter. Suicide vector inserts into psba1 site of Synechocystis. Carries spectinomycin resist. Recommend E. coli Copy cutter for propogation. pMD19T simple
    pMD19T-psba1-TetR-PL22-dCas9-SpR dCas9 from S. pyogenes (Other) PL22 Hudson Multiple Gene Repression in Cyanobacteria Using CRISPRi. ACS Synth Biol. 2015 Dec 28. Contains dCas9 from S. pyogenes under aTc inducible promoter. Suicide vector inserts into psba1 site of Synechocystis. Carries spectinomycin resist. Recommend E. coli Copy cutter for propogation. pMD19T simple
    pdCas9-M-C4 Repressor C4 (orthogonal T7-lac repressor) (Synthetic) Constitutive wild-type S. pyogenes promoter Koffas Rapid generation of CRISPR/dCas9-regulated, orthogonally repressible hybrid T7-lac promoters for modular, tuneable control of metabolic pathway fluxes in Escherichia coli. Nucleic Acids Res. 2016 Apr 13. pii: gkw231. CRISPR synthetic transcription factor repressor plasmid encoding dCas9, tracrRNA, and a single spacer CRISPR array encoding crRNA for orthogonal repression of T7-lac promoter variant C4. pdCas9
    pdCas9-M-3F2 Repressor C4 (orthogonal T7-lac repressor) (Synthetic) Constitutive wild-type S. pyogenes promoter Koffas Rapid generation of CRISPR/dCas9-regulated, orthogonally repressible hybrid T7-lac promoters for modular, tuneable control of metabolic pathway fluxes in Escherichia coli. Nucleic Acids Res. 2016 Apr 13. pii: gkw231. CRISPR synthetic transcription factor repressor plasmid encoding dCas9, tracrRNA, and a single spacer CRISPR array encoding crRNA for orthogonal repression of T7-lac promoter variant 3F2. pdCas9
    pdCas9-M-3H5 Repressor 3H5 (orthogonal T7-lac repressor) (Synthetic) Constitutive wild-type S. pyogenes promoter Koffas Rapid generation of CRISPR/dCas9-regulated, orthogonally repressible hybrid T7-lac promoters for modular, tuneable control of metabolic pathway fluxes in Escherichia coli. Nucleic Acids Res. 2016 Apr 13. pii: gkw231. CRISPR synthetic transcription factor repressor plasmid encoding dCas9, tracrRNA, and a single spacer CRISPR array encoding crRNA for orthogonal repression of T7-lac promoter variant 3H5. pdCas9
    pdCas9-M-1B6 Repressor 1B6 (orthogonal T7-lac repressor) (Synthetic) Constitutive wild-type S. pyogenes promoter Koffas Rapid generation of CRISPR/dCas9-regulated, orthogonally repressible hybrid T7-lac promoters for modular, tuneable control of metabolic pathway fluxes in Escherichia coli. Nucleic Acids Res. 2016 Apr 13. pii: gkw231. CRISPR synthetic transcription factor repressor plasmid encoding dCas9, tracrRNA, and a single spacer CRISPR array encoding crRNA for orthogonal repression of T7-lac promoter variant 1B6. pdCas9
    pdCas9-M-4F2 Repressor 4F2 (orthogonal T7-lac repressor) (Synthetic) Constitutive wild-type S. pyogenes promoter Koffas Rapid generation of CRISPR/dCas9-regulated, orthogonally repressible hybrid T7-lac promoters for modular, tuneable control of metabolic pathway fluxes in Escherichia coli. Nucleic Acids Res. 2016 Apr 13. pii: gkw231. CRISPR synthetic transcription factor repressor plasmid encoding dCas9, tracrRNA, and a single spacer CRISPR array encoding crRNA for orthogonal repression of T7-lac promoter variant 4F2. pdCas9
    pdCas9-M-5F5 Repressor 5F5 (orthogonal T7-lac repressor) (Synthetic) Constitutive wild-type S. pyogenes promoter Koffas Rapid generation of CRISPR/dCas9-regulated, orthogonally repressible hybrid T7-lac promoters for modular, tuneable control of metabolic pathway fluxes in Escherichia coli. Nucleic Acids Res. 2016 Apr 13. pii: gkw231. CRISPR synthetic transcription factor repressor plasmid encoding dCas9, tracrRNA, and a single spacer CRISPR array encoding crRNA for orthogonal repression of T7-lac promoter variant 5F5. pdCas9
    pdCas9-M-1D4 Repressor 1D4 (orthogonal T7-lac repressor) (Synthetic) Constitutive wild-type S. pyogenes promoter Koffas Rapid generation of CRISPR/dCas9-regulated, orthogonally repressible hybrid T7-lac promoters for modular, tuneable control of metabolic pathway fluxes in Escherichia coli. Nucleic Acids Res. 2016 Apr 13. pii: gkw231. CRISPR synthetic transcription factor repressor plasmid encoding dCas9, tracrRNA, and a single spacer CRISPR array encoding crRNA for orthogonal repression of T7-lac promoter variant 1D4. pdCas9
    pdCas9-M-4A6 Repressor 4A6 (orthogonal T7-lac repressor) (Synthetic) Constitutive wild-type S. pyogenes promoter Koffas Rapid generation of CRISPR/dCas9-regulated, orthogonally repressible hybrid T7-lac promoters for modular, tuneable control of metabolic pathway fluxes in Escherichia coli. Nucleic Acids Res. 2016 Apr 13. pii: gkw231. CRISPR synthetic transcription factor repressor plasmid encoding dCas9, tracrRNA, and a single spacer CRISPR array encoding crRNA for orthogonal repression of T7-lac promoter variant 4A6. pdCas9
    pdCas9-M-3A2 Repressor 3A2 (orthogonal T7-lac repressor) (Synthetic) Constitutive wild-type S. pyogenes promoter Koffas Rapid generation of CRISPR/dCas9-regulated, orthogonally repressible hybrid T7-lac promoters for modular, tuneable control of metabolic pathway fluxes in Escherichia coli. Nucleic Acids Res. 2016 Apr 13. pii: gkw231. CRISPR synthetic transcription factor repressor plasmid encoding dCas9, tracrRNA, and a single spacer CRISPR array encoding crRNA for orthogonal repression of T7-lac promoter variant 3A2. pdCas9
    pdCas9-M-1E4 Repressor 1E4 (orthogonal T7-lac repressor) (Synthetic) Constitutive wild-type S. pyogenes promoter Koffas Rapid generation of CRISPR/dCas9-regulated, orthogonally repressible hybrid T7-lac promoters for modular, tuneable control of metabolic pathway fluxes in Escherichia coli. Nucleic Acids Res. 2016 Apr 13. pii: gkw231. CRISPR synthetic transcription factor repressor plasmid encoding dCas9, tracrRNA, and a single spacer CRISPR array encoding crRNA for orthogonal repression of T7-lac promoter variant 1E4. pdCas9
    pdCas9-M-G6 Repressor G6 (orthogonal T7-lac repressor) (Synthetic) Constitutive wild-type S. pyogenes promoter Koffas Rapid generation of CRISPR/dCas9-regulated, orthogonally repressible hybrid T7-lac promoters for modular, tuneable control of metabolic pathway fluxes in Escherichia coli. Nucleic Acids Res. 2016 Apr 13. pii: gkw231. CRISPR synthetic transcription factor repressor plasmid encoding dCas9, tracrRNA, and a single spacer CRISPR array encoding crRNA for orthogonal repression of T7-lac promoter variant G6. pdCas9
    pZ8-T_dCas9 dcas9 ptac Lu Corynebacterium glutamicum Metabolic Engineering with CRISPR Interference (CRISPRi). ACS Synth Biol. 2016 Feb 16. pZ8-1 plasmid carrying dcas9, driven by the IPTG-inducible Ptac promoter, KanR pZ8-1
    pZ8-P_dCas9 dcas9 Propionate inducible promoter (prp) Lu Corynebacterium glutamicum Metabolic Engineering with CRISPR Interference (CRISPRi). ACS Synth Biol. 2016 Feb 16. pZ8-1 plasmid carrying dcas9 driven by the propionate-inducible prpD2 promoter (PprpD2), KanR pZ8-Prp
    pJMP1 dCas9 (Other) xylA Gross A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria. Cell. 2016 Jun 2;165(6):1493-506. doi: 10.1016/j.cell.2016.05.003. Epub 2016 May 26. Bacillus subtilis dCas9 expression vector; integrates into lacA/ganA pAX01
    pCas2A dCas9 PEZ3 Pfleger CRISPR interference as a titratable, trans-acting regulatory tool for metabolic engineering in the cyanobacterium Synechococcus sp. strain PCC 7002. Metab Eng. 2016 Jul 29. pii: S1096-7176(16)30062-3. doi: 10.1016/j.ymben.2016.07.007. dCas9 expressed from aTc-inducible promoter in acsA, A RBS: AGGAGA pACSA
    pCas2B dCas9 PEZ3 Pfleger CRISPR interference as a titratable, trans-acting regulatory tool for metabolic engineering in the cyanobacterium Synechococcus sp. strain PCC 7002. Metab Eng. 2016 Jul 29. pii: S1096-7176(16)30062-3. doi: 10.1016/j.ymben.2016.07.007. dCas9 expressed from aTc-inducible promoter in acsA, B RBS: TCGAGA pACSA
    pCas2C dCas9 PEZ3 Pfleger CRISPR interference as a titratable, trans-acting regulatory tool for metabolic engineering in the cyanobacterium Synechococcus sp. strain PCC 7002. Metab Eng. 2016 Jul 29. pii: S1096-7176(16)30062-3. doi: 10.1016/j.ymben.2016.07.007. dCas9 expressed from aTc-inducible promoter in acsA, C RBS: TGGACA pACSA
    pCas2D dCas9 PEZ3 Pfleger CRISPR interference as a titratable, trans-acting regulatory tool for metabolic engineering in the cyanobacterium Synechococcus sp. strain PCC 7002. Metab Eng. 2016 Jul 29. pii: S1096-7176(16)30062-3. doi: 10.1016/j.ymben.2016.07.007. dCas9 expressed from aTc-inducible promoter in acsA, D RBS: AGGACG pACSA
    pCas2E dCas9 PEZ3 Pfleger CRISPR interference as a titratable, trans-acting regulatory tool for metabolic engineering in the cyanobacterium Synechococcus sp. strain PCC 7002. Metab Eng. 2016 Jul 29. pii: S1096-7176(16)30062-3. doi: 10.1016/j.ymben.2016.07.007. dCas9 expressed from aTc-inducible promoter in acsA, E RBS: AGGGCG pACSA
    pCas2F dCas9 PEZ3 Pfleger CRISPR interference as a titratable, trans-acting regulatory tool for metabolic engineering in the cyanobacterium Synechococcus sp. strain PCC 7002. Metab Eng. 2016 Jul 29. pii: S1096-7176(16)30062-3. doi: 10.1016/j.ymben.2016.07.007. dCas9 expressed from aTc-inducible promoter in acsA, F RBS: TGGGCG pACSA
    pCas7 dCas9 c225 Pfleger CRISPR interference as a titratable, trans-acting regulatory tool for metabolic engineering in the cyanobacterium Synechococcus sp. strain PCC 7002. Metab Eng. 2016 Jul 29. pii: S1096-7176(16)30062-3. doi: 10.1016/j.ymben.2016.07.007. dCas9 expressed from low constituve promoter, c225, in acsA pACSA
    pCas8 dCas9 none Pfleger CRISPR interference as a titratable, trans-acting regulatory tool for metabolic engineering in the cyanobacterium Synechococcus sp. strain PCC 7002. Metab Eng. 2016 Jul 29. pii: S1096-7176(16)30062-3. doi: 10.1016/j.ymben.2016.07.007. dCas9 without a promoter in acsA pACSA
    pRH2502 dcas9 (Other) uv15tetO Husson Investigating essential gene function in Mycobacterium tuberculosis using an efficient CRISPR interference system. Nucleic Acids Res. 2016 Jul 12. pii: gkw625. Expression of dcas9 D10A H840A from a TetR-regulated uvtetO promoter pTC-0X-1L
    pAW019-2 dcas9 (Other) PxylA (B. megaterium) Chou Development of a CRISPR-Cas9 toolkit for comprehensive engineering of Bacillus subtilis. Appl Environ Microbiol. 2016 Jun 3. pii: AEM.01159-16. Inducible dCas9 integration vector for Bacillus subtilis pAX01 (ColE1)
    pUC18-mini-Tn7T-Lac-dCas9 (Ptac) S. pasteurianus dCas9 (Other) Prather A Robust CRISPR Interference Gene Repression System in Pseudomonas. J Bacteriol. 2018 Mar 12;200(7). pii: JB.00575-17. doi: 10.1128/JB.00575-17. Print 2018 Apr 1. Tn7 integrating plasmid with S. pasteurianus dCas9 expressed from the Ptac promoter for expression in P. putida and P. fluorescens pUC18
    pUC18-mini-Tn7T-Plac-dCas9 (Plac) S. pasteurianus dCas9 (Other) Prather A Robust CRISPR Interference Gene Repression System in Pseudomonas. J Bacteriol. 2018 Mar 12;200(7). pii: JB.00575-17. doi: 10.1128/JB.00575-17. Print 2018 Apr 1. Tn7 integrating plasmid with S. pasteurianus dCas9 expressed from the Plac promoter for expression in P. aeruginosa pUC18
    Biomolecular FeedBack (FB) pJ23100mut-dCas9-T- phtpG1-sgRNA (Other) Ellis Burden-driven feedback control of gene expression. Nat Methods. 2018 Mar 26. pii: nmeth.4635. doi: 10.1038/nmeth.4635. This construct encodes for two units. The first contains a constitutively expressed dCas9 protein. The second contains an sgRNA cassette under the control of the burden-responsive htpG1 promoter. pAZ16 ( Plasmid has got AmpR and p15A origin)
    pSET-dCas9 dCas9 (Synthetic) ermE*p Lu CRISPR/dCas9-Mediated Multiplex Gene Repression in Streptomyces. Biotechnol J. 2018 Jun 3. doi: 10.1002/biot.201800121. Expression of the dCas9 gene in Streptomyces pSET152
    pSET-dCas9-actII-4-NT-S1 dCas9 (Synthetic), sgRNA ermE*p, J23119 Lu CRISPR/dCas9-Mediated Multiplex Gene Repression in Streptomyces. Biotechnol J. 2018 Jun 3. doi: 10.1002/biot.201800121. Repression of gene expression in Streptomyces by CRISPRi pSET152
    pCT310 dCas9 (Other) T7 Tjian dCas9-targeted locus-specific protein isolation method identifies histone gene regulators. Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):E2734-E2741. doi: 10.1073/pnas.1718844115. Epub 2018 Mar 5. Bacterial expression of 6His-dCas9-3XFlag pET302/NT-His
    pdCas9-J23111 dCas9 (Other) Zhang Pooled CRISPR interference screening enables genome-scale functional genomics study in bacteria with superior performance. Nat Commun. 2018 Jun 26;9(1):2475. doi: 10.1038/s41467-018-04899-x. Plasmid constitutively expressing dCas9 protein N.A.
    pdCas9-J23109 dCas9 (Other) Zhang Improved sgRNA design in bacteria via genome-wide activity profiling. Nucleic Acids Res. 2018 Aug 21;46(14):7052-7069. doi: 10.1093/nar/gky572. Plasmid constitutively expressing dCas9 protein N.A.
    peSpdCas9-J23109 eSpdCas9 (Other) Zhang Improved sgRNA design in bacteria via genome-wide activity profiling. Nucleic Acids Res. 2018 Aug 21;46(14):7052-7069. doi: 10.1093/nar/gky572. Plasmid constitutively expressing eSpdCas9 protein N.A.
    Native promoter dCas9 Native promoter and dCas9 (Other) S. pyogenes Cas9 native promoter Barrick Synthetic Genome Defenses against Selfish DNA Elements Stabilize Engineered Bacteria against Evolutionary Failure. ACS Synth Biol. 2019 Mar 15;8(3):521-531. doi: 10.1021/acssynbio.8b00426. Epub 2019 Feb 15. dCas9 expression unit plasmid. The dCas9 expression unit plasmids contain connector ConL1, ConRE, and one dCas9 transcriptional unit. pYTK095
    TDK promoter dCas9 TDK gene promoter and dCas9 (Other) TDK gene promoter Barrick Synthetic Genome Defenses against Selfish DNA Elements Stabilize Engineered Bacteria against Evolutionary Failure. ACS Synth Biol. 2019 Mar 15;8(3):521-531. doi: 10.1021/acssynbio.8b00426. Epub 2019 Feb 15. dCas9 expression unit plasmid. The dCas9 expression unit plasmids contain connector ConL1, ConRE, and one dCas9 transcriptional unit. pYTK095
    pNS38-SadCas9-SNAP Cas9 (Other) Schwank Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair. Elife. 2018 May 29;7. pii: 33761. doi: 10.7554/eLife.33761. Bacterial vector for expression of Snap-tagged Staphylococcus aureus dCas9 pET His6 MBP N10 TEV LIC cloning vector (2C-T)
    PLJR962 Sth1 sgRNA scaffold (Other), Sth1 dCas9 (Other), TetR (Other), L5 attP (Other), L5 Int (Other), KanR (Other) Fortune Programmable transcriptional repression in mycobacteria using an orthogonal CRISPR interference platform. Nat Microbiol. 2017 Feb 6;2:16274. doi: 10.1038/nmicrobiol.2016.274. Sth1 dCas9 TetR and KanR L5 Int attP for M. smegmatis custom design
    PLJR965 Sth1 sgRNA scaffold (Other), Sth1 dCas9 (Other), TetR (deleted TetON) MtbCO (Other), L5 attP (Other), L5 Int (Other), KanR (Other) Fortune Programmable transcriptional repression in mycobacteria using an orthogonal CRISPR interference platform. Nat Microbiol. 2017 Feb 6;2:16274. doi: 10.1038/nmicrobiol.2016.274. Sth1 dCas9 TetR and KanR L5 Int attP for M. tuberculosis custom design
    FR-E01 none Bikard Genome-wide CRISPR-dCas9 screens in E. coli identify essential genes and phage host factors. PLoS Genet. 2018 Nov 7;14(11):e1007749. doi: 10.1371/journal.pgen.1007749. eCollection 2018 Nov. Expression of dCas9 gene under the control of a Ptet promoter in the E. coli chromosome none
    p15A_J23108_SpydCas9_CmR dCas9 from S. pyogenes Noireaux An educational module to explore CRISPR technologies with a cell-free transcription-translation system (unpublished) Expresses S. pyogenes dCas9 pBAD33
    pJMP1161 dcas9 (Other) Gross Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 Jan 7. pii: 10.1038/s41564-018-0327-z. doi: 10.1038/s41564-018-0327-z. rfp "test" strain R6Kgamma
    pJMP1171 dcas9 (Other) Gross Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 Jan 7. pii: 10.1038/s41564-018-0327-z. doi: 10.1038/s41564-018-0327-z. rfp "test" strain R6Kgamma
    pJMP1185 dcas9 (Other) Gross Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 Jan 7. pii: 10.1038/s41564-018-0327-z. doi: 10.1038/s41564-018-0327-z. rfp "test" strain R6Kgamma
    pJMP1189 dcas9 (Other) Gross Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 Jan 7. pii: 10.1038/s41564-018-0327-z. doi: 10.1038/s41564-018-0327-z. rfp "test" strain R6Kgamma
    pJMP1219 dcas9 (Other) Gross Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 Jan 7. pii: 10.1038/s41564-018-0327-z. doi: 10.1038/s41564-018-0327-z. rfp "test" strain R6Kgamma
    pJMP1223 dcas9 (Other) Gross Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 Jan 7. pii: 10.1038/s41564-018-0327-z. doi: 10.1038/s41564-018-0327-z. rfp "test" strain R6Kgamma
    pJMP1237 dcas9 (Other) Gross Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 Jan 7. pii: 10.1038/s41564-018-0327-z. doi: 10.1038/s41564-018-0327-z. for cloning new sgRNAs R6Kgamma
    pJMP1335 dcas9 (Other) Gross Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 Jan 7. pii: 10.1038/s41564-018-0327-z. doi: 10.1038/s41564-018-0327-z. rfp "test" strain R6Kgamma
    pJMP1337 dcas9 (Other) Gross Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 Jan 7. pii: 10.1038/s41564-018-0327-z. doi: 10.1038/s41564-018-0327-z. for cloning new sgRNAs R6Kgamma
    pJMP1339 dcas9 (Other) Gross Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 Jan 7. pii: 10.1038/s41564-018-0327-z. doi: 10.1038/s41564-018-0327-z. for cloning new sgRNAs R6Kgamma
    pJMP1354 dcas9 (Other) Gross Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 Jan 7. pii: 10.1038/s41564-018-0327-z. doi: 10.1038/s41564-018-0327-z. for cloning new sgRNAs R6Kgamma
    pJMP1356 dcas9 (Other) Gross Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 Jan 7. pii: 10.1038/s41564-018-0327-z. doi: 10.1038/s41564-018-0327-z. for cloning new sgRNAs R6Kgamma
    pJMP1358 dcas9 (Other) Gross Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 Jan 7. pii: 10.1038/s41564-018-0327-z. doi: 10.1038/s41564-018-0327-z. for cloning new sgRNAs R6Kgamma
    pJMP1360 dcas9 (Other) Gross Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 Jan 7. pii: 10.1038/s41564-018-0327-z. doi: 10.1038/s41564-018-0327-z. for cloning new sgRNAs R6Kgamma
    pJMP1363 dcas9 (Other) Gross Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 Jan 7. pii: 10.1038/s41564-018-0327-z. doi: 10.1038/s41564-018-0327-z. for stabilizing ICE in the presence of rapI expression R6Kgamma
    pC0.017 dCas9 (Other) McCormick CyanoGate: A Modular Cloning Suite for Engineering Cyanobacteria Based on the Plant MoClo Syntax. Plant Physiol. 2019 May;180(1):39-55. doi: 10.1104/pp.18.01401. Epub 2019 Feb 28. Level 0 Part. CDS pICH41308
    pC0.018 dCas9+deg-tag (Other) McCormick CyanoGate: A Modular Cloning Suite for Engineering Cyanobacteria Based on the Plant MoClo Syntax. Plant Physiol. 2019 May;180(1):39-55. doi: 10.1104/pp.18.01401. Epub 2019 Feb 28. Level 0 Part. CDS pICH41308
    C41m dCas9 (Synthetic) Murray CIDAR MoClo Extension (unpublished) MoClo golden gate assembly CD part for dCas9 (Catalytically-inactive S. pyogenes Cas9, for gRNA-targeted repression). Please see Supplemental Documents for annotated Genbank file. DVA
    C114m dCas9 with no bbsI or BsaI sites (Synthetic) Murray CIDAR MoClo Extension (unpublished) MoClo golden gate assembly CD part for Cas9 (S. pyogenes gRNA-targeted endonuclease Cas9, with bbsI cut sites removed synonymously). Please see Supplemental Documents for annotated Genbank file. DVA
    pD2-dcas9-J23101-GFP dCas9 (Synthetic) Poh Regulating exopolysaccharide gene wcaF allows control of Escherichia coli biofilm formation. Sci Rep. 2018 Sep 3;8(1):13127. doi: 10.1038/s41598-018-31161-7. Constitutive dCas9 and GFP expression plasmid pBbA2c
    pFD116 Ptet (Other), dcas9 (Other), PpflB sgRNA BsaI (Synthetic) Bikard Gene silencing with CRISPRi in bacteria and optimization of dCas9 expression levels. Methods. 2019 Aug 1. pii: S1046-2023(18)30497-3. doi: 10.1016/j.ymeth.2019.07.024. pFD116 carries dcas9 controlled by an aTc-inducible Ptet promoter, a sgRNA controlled constitutively from PpflB S. aureus promoter to clone a guide between two BsaI sites and oriT on pLZ12 vector pLZ12
    pCRISPR-dCas9 streptomyces codon optimized spdCas9, sgRNA casette (Other) ermE*/tipA Weber CRISPR-Cas9 Based Engineering of Actinomycetal Genomes. ACS Synth Biol. 2015 Sep 18;4(9):1020-9. doi: 10.1021/acssynbio.5b00038. Epub 2015 Apr 7. Gene knockdown for actinomycetes pGM1190
    pJUMP29[dCas9]-1A(lacZ) French Joint Universal Modular Plasmids (JUMP): A flexible and comprehensive platform for synthetic biology bioRxiv, October 10, 2019 Level 1 vector. With lacZ as alternative cloning reporter.OriV 9 (pBBR322/ROP; medium copy number). Constitutive dCas9 in downstream secondary site. pJUMP29-1A
    pJUMP18-dCas9_O Part dCas9_O (Synthetic) French Joint Universal Modular Plasmids (JUMP): A flexible and comprehensive platform for synthetic biology bioRxiv, October 10, 2019 Basic Part O- ORF; Catalytically dead mutant of the Cas9 from Streptococcus pyogenes. pJUMP18-Uac
    pAH-CTX1-rhadCas9 Burkholderia cenocepacia codon-optimized dCas9 (Synthetic) PrhaBAD Cardona A broad-host-range CRISPRi toolkit for silencing gene expression in Burkholderia. ACS Synth Biol. 2019 Sep 6. doi: 10.1021/acssynbio.9b00232. Derived from pAH-CTX1-rha. The Burkholderia cenocepacia codon-optimized dCas9 cloned downstream of PrhaBAD. Hence, dCas9 is controlled by the rhamnose-inducible promoter system. pAH-CTX1-rha
    pAH-CTX1-rhadCas9-native S. pyogenes dCas9 (Other) PrhaBAD Cardona A broad-host-range CRISPRi toolkit for silencing gene expression in Burkholderia. ACS Synth Biol. 2019 Sep 6. doi: 10.1021/acssynbio.9b00232. Derived from pAH-CTX1-rha. The native Streptococcus pyogenes dCas9 gene cloned downstream of PrhaBAD. Non-codon-optimized dCas9 version of pAH-CTX1-rhadCas9. pAH-CTX1-rha
    pXGFPC-5 Pxyl-dcas9 (Spy) dcas9 (Streptococcus pyogenes) (Other) xylose Laub A CRISPR Interference System for Efficient and Rapid Gene Knockdown in Caulobacter crescentus mBio expresses dcas9 from Streptococcus pyogenes; repressed with 0.2% glucose, induced with 0.3% xylose; for homologous recombination at the xylose locus in Caulobacter crescentus; tetracycline resistance pXGFPC-5
    pXGFPC-5 Pxyl-dcas9 (Sth3) dcas9 (Streptococcus thermophilus #3) (Other) xylose Laub A CRISPR Interference System for Efficient and Rapid Gene Knockdown in Caulobacter crescentus mBio expresses dcas9 (Streptococcus thermophilus #3); repressed with 0.2% glucose, induced with 0.3% xylose; for homologous recombination at the xyl locus in Caulobacter crescentus; tetracycline resistance pXGFPC-5
    pXGFPC-5 Pxyl-dcas9 (Spa) dcas9 (Streptococcus pasteurianus) (Other) xylose Laub A CRISPR Interference System for Efficient and Rapid Gene Knockdown in Caulobacter crescentus mBio expresses dcas9 (Streptococcus pasteurianus); repressed with 0.2% glucose, induced with 0.3% xylose; for homologous recombination at the xylose locus in Caulobacter crescentus; tetracycline resistance pXGFPC-5
    pVCERC-5 Pvan-dcas9 (Sth3) dcas9 (Streptococcus thermophilus #3) (Other) vanillate Laub A CRISPR Interference System for Efficient and Rapid Gene Knockdown in Caulobacter crescentus mBio expresses dcas9 from Streptococcus thermophilus #3; induced with vanillate; for homologous recombination at the vanillate locus in Caulobacter crescentus; tetracycline resistance pVCERC-5
    pJ1996_v2 dCas9 & Csy4 Schaerli Multistable and dynamic CRISPRi-based synthetic circuits. Nat Commun. 2020 Jun 2;11(1):2746. doi: 10.1038/s41467-020-16574-1. dCas9 & Csy4 pCDF
    pJ2018 dCas9, LuxR & Csy4 Schaerli Multistable and dynamic CRISPRi-based synthetic circuits. Nat Commun. 2020 Jun 2;11(1):2746. doi: 10.1038/s41467-020-16574-1. dCas9, LuxR & Csy4 pCDF
    pMSP3545-dCas9Str dCas9Str (Other) nisA Kline Multiplex CRISPRi-Cas9 silencing of planktonic and stage-specific biofilm genes in Enterococcus faecalis (unpublished) Expresses dCas9str under nisin-inducible nisA promoter in pMSP3545 backbone pMSP3545
    pSM-dCas9::Ap Ng CRISPRi-mediated Programming Essential Gene can as a Direct Enzymatic Performance Evaluation & Determination (DEPEND) System. Biotechnol Bioeng. 2020 May 27. doi: 10.1002/bit.27443. Shuttle vector for expression dCas9, mobilization cluster, expresses the tracrRNA and a CRISPR array designed for the easy cloning of new spacers. pSM-dCas9

    Plant

    Plasmid Gene/Insert Promoter Selectable Marker PI Publication Hidden Extra Search Info
    pBUN6I11 dCas9-KRAB (Synthetic), gRNA scaffold (Synthetic) Ubi1p, OsU3p Bar Chen A CRISPR/Cas9 toolkit for multiplex genome editing in plants. BMC Plant Biol. 2014 Nov 29;14(1):327. CRISPR/Cas based plant genome editing and gene regulation; expresses dCas9-KRAB, gRNA scaffold for insertion of target sequence (OsU3 promoter), Bar resistance pGreen-like binary vector
    pHSN6I01 dCas9-KRAB (Synthetic), gRNA scaffold (Synthetic) 2×35Sp, AtU6-26p Hygromycin Chen A CRISPR/Cas9 toolkit for multiplex genome editing in plants. BMC Plant Biol. 2014 Nov 29;14(1):327. CRISPR/Cas based plant genome editing and gene regulation; expresses dCas9-KRAB, gRNA scaffold for insertion of target sequence (AtU6-26 promoter), Hyg resistance pGreen-like binary vector
    pEGB 35S:dCas9:Tnos (GB1191) dCas9 (Other) 35S Orzaez GoldenBraid 2.0: a comprehensive DNA assembly framework for plant synthetic biology. Plant Physiol. 2013 Jul;162(3):1618-31. Transcriptional unit for human codon optimized with mutated (D10A, H840A) and inactivated catalytic domains Cas9 protein plant expression driven by the 35S promoter pDGB3alpha2
    pYPQ153 pco-dCas9-3X(SRDX) (Plant codon-optimized) (Other) Qi A CRISPR/Cas9 toolbox for multiplexed plant genome editing and transcriptional regulation. Plant Physiol. 2015 Aug 21. pii: pp.00636.2015. Gateway entry vector with pco-dCas9-3X(SRDX) pYPQ185-linker1
    pdCas9 (GB1079) Cas9 coding region with mutated (D10A, H840A) and inactivated catalytic domains (human codon optimised) (Other) Orzaez A modular toolbox for gRNA-Cas9 genome engineering in plants based on the GoldenBraid standard. Plant Methods. 2016 Feb 1;12:10. doi: 10.1186/s13007-016-0101-2. eCollection 2016. Provides the human codon optimized CDS of Cas9 protein with mutated (D10A, H840A) and inactivated catalytic domains as a level 0 GoldenBraid part for C-terminal fusions pUPD
    pEGB 35s:dCas:BRD:tNos (GB1172) dCas9:BRD (Synthetic) 35S Orzaez A modular toolbox for gRNA-Cas9 genome engineering in plants based on the GoldenBraid standard. Plant Methods. 2016 Feb 1;12:10. doi: 10.1186/s13007-016-0101-2. eCollection 2016. Transcriptional unit of (human codon optimized) inactivated Cas9 fused to the BRD Transcriptional Repressor pDGB3alpha2
    pYPQ223 (dAsCpf1-SRDX) dAsCpf1-SRDX (Other) Qi A CRISPR-Cpf1 system for efficient genome editing and transcriptional repression in plants. Nat Plants. 2017 Feb 17;3:17018. doi: 10.1038/nplants.2017.18. Deactivated AsCpf1-SRDX repressor fusion; transcriptional repressor dCpf1 Gateway entry plasmid pYPQ221
    pYPQ233 (dLbCpf1-SRDX) LbCpf1-SRDX (Other) Qi A CRISPR-Cpf1 system for efficient genome editing and transcriptional repression in plants. Nat Plants. 2017 Feb 17;3:17018. doi: 10.1038/nplants.2017.18. Deactivated LbCpf1-SRDX repressor fusion; transcriptional repressor dCpf1 Gateway entry plasmid pYPQ221
    pMOD_A0402 AtCas9_dead (D10A + H840A) (Synthetic) AtUbi10 Voytas A multi-purpose toolkit to enable advanced genome engineering in plants. Plant Cell. 2017 May 18. pii: tpc.00922.2016. doi: 10.1105/tpc.16.00922. Module A, Promoter: AtUbi10, Gene: AtCas9_dead (D10A + H840A), Terminator: HSP pMOD_A1001
    pMOD_A0408 AtCas9_dead (D10A + H840A) (Synthetic) EC1.2 Voytas A multi-purpose toolkit to enable advanced genome engineering in plants. Plant Cell. 2017 May 18. pii: tpc.00922.2016. doi: 10.1105/tpc.16.00922. Module A, Promoter: EC1.2, Gene: AtCas9_dead (D10A + H840A), Terminator: HSP pMOD_A1001
    pMOD_A0801 Csy4-P2A-AtCas9_dead (D10A + H840A) (Synthetic) 35S Voytas A multi-purpose toolkit to enable advanced genome engineering in plants. Plant Cell. 2017 May 18. pii: tpc.00922.2016. doi: 10.1105/tpc.16.00922. Module A, Promoter: 35S, Gene: Csy4-P2A-AtCas9_dead (D10A + H840A), Terminator: HSP pMOD_A1001
    pMOD_A0802 Csy4-P2A-AtCas9_dead (D10A + H840A) (Synthetic) AtUbi10 Voytas A multi-purpose toolkit to enable advanced genome engineering in plants. Plant Cell. 2017 May 18. pii: tpc.00922.2016. doi: 10.1105/tpc.16.00922. Module A, Promoter: AtUbi10, Gene: Csy4-P2A-AtCas9_dead (D10A + H840A), Terminator: HSP pMOD_A1001
    pMOD_A0808 Csy4-P2A-AtCas9_dead (D10A + H840A) (Synthetic) EC1.2 Voytas A multi-purpose toolkit to enable advanced genome engineering in plants. Plant Cell. 2017 May 18. pii: tpc.00922.2016. doi: 10.1105/tpc.16.00922. Module A, Promoter: EC1.2, Gene: Csy4-P2A-AtCas9_dead (D10A + H840A), Terminator: HSP pMOD_A1001
    pMOD_A1410 TaCas9_dead (D10A + H840A) (Synthetic) ZmUbi Voytas A multi-purpose toolkit to enable advanced genome engineering in plants. Plant Cell. 2017 May 18. pii: tpc.00922.2016. doi: 10.1105/tpc.16.00922. Module A, Promoter: ZmUbi, Gene: TaCas9_dead (D10A + H840A), Terminator: HSP pMOD_A1001
    pMOD_A1810 Csy4-P2A-TaCas9_dead (D10A + H840A) (Synthetic) ZmUbi Voytas A multi-purpose toolkit to enable advanced genome engineering in plants. Plant Cell. 2017 May 18. pii: tpc.00922.2016. doi: 10.1105/tpc.16.00922. Module A, Promoter: ZmUbi, Gene: Csy4-P2A-TaCas9_dead (D10A + H840A), Terminator: HSP pMOD_A1001
    pDIRECT_21B Engineering Reagent: 35S:AtCas9_dead + AtU6:gRNA (Synthetic) Hygromycin Voytas A multi-purpose toolkit to enable advanced genome engineering in plants. Plant Cell. 2017 May 18. pii: tpc.00922.2016. doi: 10.1105/tpc.16.00922. Direct Cloning, Type: T-DNA, Engineering Reagent: 35S:AtCas9_dead + AtU6:gRNA, Plant Selection: 2x35S:hpt II pTRANS_210
    pDIRECT_25G Engineering Reagent: ZmUbi:TaCas9_dead + TaU6:gRNA (Synthetic) Hygromycin Voytas A multi-purpose toolkit to enable advanced genome engineering in plants. Plant Cell. 2017 May 18. pii: tpc.00922.2016. doi: 10.1105/tpc.16.00922. Direct Cloning, Type: T-DNA, Engineering Reagent: ZmUbi:TaCas9_dead + TaU6:gRNA , Plant Selection: PvUbi2:hpt II pTRANS_250d
    pDIRECT_26G Engineering Reagent: ZmUbi:TaCas9_dead + TaU6:gRNA (Synthetic) Basta Voytas A multi-purpose toolkit to enable advanced genome engineering in plants. Plant Cell. 2017 May 18. pii: tpc.00922.2016. doi: 10.1105/tpc.16.00922. Direct Cloning, Type: T-DNA, Engineering Reagent: ZmUbi:TaCas9_dead + TaU6:gRNA , Plant Selection: PvUbi2:bar pTRANS_260d
    pAtCas9-dead_1 AtCas9_D10A+H840A (dead) (Synthetic) Hygromycin Voytas A multi-purpose toolkit to enable advanced genome engineering in plants. Plant Cell. 2017 May 18. pii: tpc.00922.2016. doi: 10.1105/tpc.16.00922. Cas9 only expression, Cas9 Type: AtCas9_D10A+H840A (dead), Plant Selection: 2x35S:hpt II pCAMBIA
    pAtCas9-dead_2 AtCas9_D10A+H840A (dead) (Synthetic) Kanamycin Voytas A multi-purpose toolkit to enable advanced genome engineering in plants. Plant Cell. 2017 May 18. pii: tpc.00922.2016. doi: 10.1105/tpc.16.00922. Cas9 only expression, Cas9 Type: AtCas9_D10A+H840A (dead), Plant Selection: 2x35S:npt II pCAMBIA
    pAtCas9-dead_3 AtCas9_D10A+H840A (dead) (Synthetic) Basta Voytas A multi-purpose toolkit to enable advanced genome engineering in plants. Plant Cell. 2017 May 18. pii: tpc.00922.2016. doi: 10.1105/tpc.16.00922. Cas9 only expression, Cas9 Type: AtCas9_D10A+H840A (dead), Plant Selection: 2x35S:bar pCAMBIA
    pTaCas9-dead_5 TaCas9_D10A+H840A (dead) (Synthetic) Hygromycin Voytas A multi-purpose toolkit to enable advanced genome engineering in plants. Plant Cell. 2017 May 18. pii: tpc.00922.2016. doi: 10.1105/tpc.16.00922. Cas9 only expression, Cas9 Type: TaCas9_D10A+H840A (dead), Plant Selection: PvUbi2:hpt II pCAMBIA
    pTaCas9-dead_6 TaCas9_D10A+H840A (dead) (Synthetic) Basta Voytas A multi-purpose toolkit to enable advanced genome engineering in plants. Plant Cell. 2017 May 18. pii: tpc.00922.2016. doi: 10.1105/tpc.16.00922. Cas9 only expression, Cas9 Type: TaCas9_D10A+H840A (dead), Plant Selection: PvUbi2:bar pCAMBIA
    pHdzCas9-KRAB CaMV35S Hygromycin Ng CRISPRi mediated phosphoenolpyruvate carboxylase regulation to enhance the production of lipid in Chlamydomonas reinhardtii. Bioresour Technol. 2017 May 4. pii: S0960-8524(17)30619-3. doi: 10.1016/j.biortech.2017.04.111. Expression dzCas9-KRAB in microalgae. CRISPR/Cas based plant genome editing and gene regulation, Hyg resistance pHdzCas9-KRAB
  • Tag / Fusion Protein
    • KRAB (C terminal on insert)
    		•
    pORFE0003 AtDeadCAS9 D10A H840A (Other) Chevalier Chevalier Lab plasmids (unpublished) AtDeadCAS9 D10A H840A module CDS1 pICH41308
    pORFE0005 AtDeadCAS9 D10A H840A without stop codon (Other) Chevalier Chevalier Lab plasmids (unpublished) AtDeadCAS9 D10A H840A without stop codon module CDS1ns pAGM1287
    p221z-dCAS9p-t35s dCAS9p (Other) Mähönen An inducible genome editing system for plants. Nat Plants. 2020 Jun 29. pii: 10.1038/s41477-020-0695-2. doi: 10.1038/s41477-020-0695-2. Entry clone containing dCAS9p and 35S terminator. Used to make CRISPR construct . For use in plants and compatible with the MultiSite Gateway system pDONR-221z

    Yeast

    Plasmid Gene/Insert Promoter Selectable Marker PI Publication Hidden Extra Search Info
    pTDH3-dCas9 dCas9 TDH3 LEU2 Weissman CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes. Cell. 2013 Jul 9. pii: S0092-8674(13)00826-X. doi: 10.1016/j.cell.2013.06.044. Yeast CEN/ARS vector (Leu2) that contains dCas9 fused to NLS controlled by TDH3 promoter pJED103
    pTDH3-dCas9-Mxi1 dCas9-Mxi1 TDH3 LEU2 Weissman CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes. Cell. 2013 Jul 9. pii: S0092-8674(13)00826-X. doi: 10.1016/j.cell.2013.06.044. Yeast CEN/ARS vector (Leu2) that contains dCas9 fused to NLS and Mxi1 domain controlled by TDH3 promoter pJED103
    pJZC518 dCas9 (Other) pTdh3 LEU2 Qi Engineering Complex Synthetic Transcriptional Programs with CRISPR RNA Scaffolds. Cell. 2014 Dec 18. pii: S0092-8674(14)01570-0. doi: 10.1016/j.cell.2014.11.052. Yeast dCas9 expression plasmid pNH605
    pTPGI_dCas9 Yeast-optimized dCas9 (Saccharomyces cerevisiae) pTPGI TRP1 Lu Tunable and Multifunctional Eukaryotic Transcription Factors Based on CRISPR/Cas. ACS Synth Biol. 2013 Sep 11. encodes yeast-optimized dCas9 synthetic transcription factor pRS304
    pRS416-dCas9-Mxi1 + TetR + pRPR1(TetO)-NotI-gRNA dCas9-Mxi1 (Synthetic), Tet Repressor (Other), Structural gRNA for S pyogenes (Synthetic) pTef1, pGPM1, pRPR1(TetO) URA3 Davis Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design. Genome Biol. 2016 Mar 8;17(1):45. doi: 10.1186/s13059-016-0900-9. pRS416 Ura marked Cen/Ars plasmid with dCas9-Mxi1 under Tef1 promoter, and tet-incucibile RPR1 promoter with NotI cloning site adjacent to gRNA pRS416
    pCRISPRi_Mxi1_yl Codon optimized dCas9-Mxi1 (Synthetic), sgRNA expression cassette (Synthetic) UAS1B8-TEF(136), SCR1'-tRNA LEU2 Wheeldon CRISPRi repression of nonhomologous end-joining for enhanced genome engineering via homologous recombination in Yarrowia lipolytica. Biotechnol Bioeng. 2017 Aug 19. doi: 10.1002/bit.26404. CRISPR-dCas9-Mxi1 vector for Yarrowia lipolytica, expressing dCas9-Mxi1 and AvrII site for sgRNA insertion pUC19
    pCRISPRi_Mxi1_yl_NHEJ Codon optimized dCas9-Mxi1 (Synthetic), KU70 sgRNA expression cassette (Synthetic), KU80a sgRNA expression cassette (Synthetic), KU80b sgRNA expression cassette (Synthetic) UAS1B8-TEF(136), SCR1'-tRNA, SCR1'-tRNA, SCR1'-tRNA LEU2 Wheeldon CRISPRi repression of nonhomologous end-joining for enhanced genome engineering via homologous recombination in Yarrowia lipolytica. Biotechnol Bioeng. 2017 Aug 19. doi: 10.1002/bit.26404. CRISPRi vector for Yarrowia lipolytica, repressing KU70 and KU80 for enhanced HR pUC19
    pRS143 NAT Shapiro A CRISPR Interference Platform for Efficient Genetic Repression in Candida albicans. mSphere. 2019 Feb 13;4(1). pii: 4/1/e00002-19. doi: 10.1128/mSphere.00002-19. CRISPRi plasmid for use in Candida albicans. Contains dCas9 and NEUT5L integration site and the sgRNA cloning site (SNR52 promoter, PacI sites, sgRNA tail) pJK-caCas9-NatMX-Neut5L
    pRS159 NAT Shapiro A CRISPR Interference Platform for Efficient Genetic Repression in Candida albicans. mSphere. 2019 Feb 13;4(1). pii: 4/1/e00002-19. doi: 10.1128/mSphere.00002-19. CRISPRi plasmid for use in Candida albicans. Contains dCas9-Mxi1 and NEUT5L integration site and the sgRNA cloning site (SNR52 promoter, PacI sites, sgRNA tail) pRS143
    pMM585 dCas9 (Saccharomyces cerevisiae) McClean Optogenetic Repressors of Gene Expression in Yeasts Using Light-Controlled Nuclear Localization. Cell Mol Bioeng. 2019 Sep 24;12(5):511-528. doi: 10.1007/s12195-019-00598-9. eCollection 2019 Oct. Part Plasmid for dCas9, Part 3a(coding sequence) pYTK001
    pMM586 dCas9 (Saccharomyces cerevisiae) McClean Optogenetic Repressors of Gene Expression in Yeasts Using Light-Controlled Nuclear Localization. Cell Mol Bioeng. 2019 Sep 24;12(5):511-528. doi: 10.1007/s12195-019-00598-9. eCollection 2019 Oct. Part Plasmid for dCas9, Part 3(coding sequence) pYTK001
    pMM587 dCas9 (Saccharomyces cerevisiae) McClean Optogenetic Repressors of Gene Expression in Yeasts Using Light-Controlled Nuclear Localization. Cell Mol Bioeng. 2019 Sep 24;12(5):511-528. doi: 10.1007/s12195-019-00598-9. eCollection 2019 Oct. Part Plasmid for dCas9, Part 3b(coding sequence) pYTK001
    pMM729 Mxi1-dCas9 (Saccharomyces cerevisiae) McClean Optogenetic Repressors of Gene Expression in Yeasts Using Light-Controlled Nuclear Localization. Cell Mol Bioeng. 2019 Sep 24;12(5):511-528. doi: 10.1007/s12195-019-00598-9. eCollection 2019 Oct. Part Plasmid for Mxi1-dCas9, Part 3(coding sequence) pYTK001
    pMM765 dCas9 NLS Stop (Saccharomyces cerevisiae) McClean Optogenetic Repressors of Gene Expression in Yeasts Using Light-Controlled Nuclear Localization. Cell Mol Bioeng. 2019 Sep 24;12(5):511-528. doi: 10.1007/s12195-019-00598-9. eCollection 2019 Oct. Part Plasmid for dCas9 NLS Stop, Part 3(coding sequence) pYTK001
    pMM766 dCas9 NLS Stop (Saccharomyces cerevisiae) McClean Optogenetic Repressors of Gene Expression in Yeasts Using Light-Controlled Nuclear Localization. Cell Mol Bioeng. 2019 Sep 24;12(5):511-528. doi: 10.1007/s12195-019-00598-9. eCollection 2019 Oct. Part Plasmid for dCas9 NLS Stop, Part 3b(coding sequence) pYTK001
    pMM767 dCas9 NLS (Saccharomyces cerevisiae) McClean Optogenetic Repressors of Gene Expression in Yeasts Using Light-Controlled Nuclear Localization. Cell Mol Bioeng. 2019 Sep 24;12(5):511-528. doi: 10.1007/s12195-019-00598-9. eCollection 2019 Oct. Part Plasmid for dCas9 NLS, Part 3(coding sequence) pYTK001
    pMM768 dCas9 NLS (Saccharomyces cerevisiae) McClean Optogenetic Repressors of Gene Expression in Yeasts Using Light-Controlled Nuclear Localization. Cell Mol Bioeng. 2019 Sep 24;12(5):511-528. doi: 10.1007/s12195-019-00598-9. eCollection 2019 Oct. Part Plasmid for dCas9 NLS, Part 3b(coding sequence) pYTK001
    pMM769 dCas9 NLS (Saccharomyces cerevisiae) McClean Optogenetic Repressors of Gene Expression in Yeasts Using Light-Controlled Nuclear Localization. Cell Mol Bioeng. 2019 Sep 24;12(5):511-528. doi: 10.1007/s12195-019-00598-9. eCollection 2019 Oct. Part Plasmid for dCas9 NLS, Part 3a(coding sequence) pYTK001
    p415:iCas9 mTN3-GGS6-dCas9 (Synthetic) GalL LEU2 Wang RNA-Guided Recombinase-Cas9 Fusion Targets Genomic DNA Deletion and Integration. CRISPR J. 2019 Aug;2:209-222. doi: 10.1089/crispr.2019.0013. Expression of mTN3-GGS6-dCas9 (iCas9) in yeast. p415


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